48
6597cd60-ab39-4eae-8311-c40102d8cb87
2018_1
5
2
8
https://doi.org/10.1186/s40168-018-0416-5
Differential human gut microbiome assemblages during soil-transmitted helminth infections in Indonesia and Liberia
2
2018
Rosa MA, Supali T, Gankpala L, Djuardi Y, Sartono E, Zhou Y, Fischer K, Martin J, Tyagi R, Bolay FK, Fischer PU, Yazdanbakhsh M, Mitreva M
true
6
PRJNA407815
1
1
1
This study investigated conserved microbial signatures positively or negatively associated with soil-transmitted helminth infections across Liberia and Indonesia; in addition, longitudinal samples analysis from a double-blind randomized trial showed that the gut microbiota responds to deworming but does not transition closer to the uninfected state. The main compositional alterations detected in the faecal microbiota of infected individuals were as follows:
- Succinivibrio expanded in all helminth-infected individuals, irrespective of species of infecting parasites;
- Solobacterium expanded in Necator and Trichuris-infected individuals
- Desulfovibrio expanded in Ascaris and Trichuris-infected individuals
- Four Firmicutes and one unclassified Bacteroidetes, including Allobaculum, expanded in Ascaris and Necator-infected individuals
- Lachnospiraceae negatively associated with infection by Ascaris and Necator
- Rhodococcus negatively associated with infection by Ascaris and Trichuris
- Olsenella, Flavonifractor, and Enterococcus, Erysipelotrichaceae expanded in all infected individuals
- Clostridium IV and Collinsella positively associated with infection in individuals from Liberia (but not from Indonesia).
Anthelmintic treatment resulted in expanded Enterococcus, Pseudomonadales, Flavobacteriaceae, Sphingobacteriaceae and reduced Ochrobactrum.
Deworming resulted in expanded Sphingobacterium, Deltaproteobacteria, Erysipelotrichaceae and reduced Prevotellaceae, Sutterellaceae, Leuconostocaceae and Butyricimonas.
Self-clearance resulted in expanded Bacteroidales families, with Turicibacter negatively associated with baseline infection.
Akkermansia and its parent phylogeny, as well as Ruminococcus, significantly associated with incomplete worm clearance or reinfection.
14,18
8,29,32,37,42,74,89,104
3,9
<_link_ParasiteSpecies>19,9,3
<_link_InfectedSpecies>5
<_link_SampleType>2
2019-06-18T15:20:05.78+00:00
2019-06-25T13:03:17.37+00:00
true
49
8cde7e67-b9f0-44dc-9aba-04357e54b87f
2018_2
1
1
8
https://doi.org/10.1038/s41598-018-30412-x
Schistosoma mansoni infection is associated with quantitative and qualitative modi cations of the mammalian intestinal microbiota
22
2018
Timothy P. Jenkins, Laura E. Peachey, Nadim J. Ajami, Andrew S. MacDonald, Michael H. Hsieh, Paul J. Brindley, Cinzia Cantacessi, Gabriel Rinaldi
true
3
10.17632/y8c7vpc8zp.1
2
2
1
↓Alpha diversity, ↑beta diversity
11,21
29
13
2,6,15,23,24
16
1,2
<_link_ParasiteSpecies>20
<_link_InfectedSpecies>1
<_link_SampleSite>8
<_link_SampleType>8
2019-06-18T15:32:43.65+00:00
false
50
3a7de6e6-d4b7-48fc-b93d-1d01f1751741
2010_1
1
1
64
https://doi.org/10.1002/ibd.21299
Alteration of the murine gut microbiota during infection with the parasitic helminth Heligmosomoides polygyrus
10
2010
Walk ST, Blum AM, Ang-Sheng S, Weinstock JV, Young VB
false
5
N/A (qPCR)
0
0
0
This study investigated changes in the composition of the ileal and coecal microbiota of C57BL/6 mice infected with Heligmosomoides polygyrus, using samples collected 2 weeks post-experimental infection.
6,14,19
<_link_ParasiteSpecies>1
<_link_InfectedSpecies>1
<_link_SampleSite>2,2048
<_link_SampleType>16
2019-06-18T19:10:45.82+00:00
2019-06-25T15:52:22.74+00:00
true
51
e1ce85ff-febb-4600-9b14-7e7f21294216
2011_1
2
1
4
https://doi.org/10.1371/journal.pone.0024417
Metagenome plasticity of the bovine abomasal microbiota in immune animals in response to Ostertagia ostertagi Infection
20
2011
Li RW, Wu S, Li W, Huang Y, Gasbarre LC
true
6
PRJNA518072
0
0
0
This study characterized the abomasal microbiota composition of cattle partially immune to Ostertagia ostertagi infection in response to reinfection.
46,102
<_link_ParasiteSpecies>2
<_link_InfectedSpecies>2
<_link_SampleSite>16
<_link_SampleType>8
2019-06-18T19:16:35.35+00:00
2019-06-25T15:49:31.68+00:00
true
52
8b7c0e8c-2f20-4ed3-8415-cf1d9fc1d970
2012_1
3
1
8
https://doi.org/10.1371/journal.ppat.1003000
Therapeutic helminth infection of macaques with idiopathic chronic diarrhea alters the inflammatory signature and mucosal microbiota of the colon
19
2012
Broadhurst MJ, Ardeshir A, Kanwar B, Mirpuri J, Gundra UM, Leung JM, Wiens KE, Vujkovic-Cvijin I, Kim CC, Yarovinsky F, Lerche NW, McCune JM, Loke P
true
5
N/A
1
1
0
The study investigated the effects of experimental infection of captive rhesus monkeys with Trichuris trichiura on the composition of microbial communities attached to the intestinal mucosa, and established correlations between such changes and the amelioration of clinical signs of idiopathic chronic diarrhoea.
2,11,29,36
13,83,92
2,5,8
3,15
<_link_ParasiteSpecies>3
<_link_InfectedSpecies>3
<_link_SampleSite>128
<_link_SampleType>64,256
2019-06-18T19:23:33.32+00:00
2019-07-05T09:35:45.26+00:00
true
53
29333887-5ac9-48eb-bb3d-d6436ffbbac8
2012_2
4
1
16
https://doi.org/10.1371/journal.pone.0035470
Worm burden-dependent disruption of the porcine colon microbiota by Trichuris suis infection
20
2012
Wu S, Li RW, Li W, Beshah E, Dawson HD, Urban JF Jr
true
4
4474250.3 to 4474257.3, 4474259.3, 4474261.3 and 4474262.3
0
0
0
This study characterised the microbiota composition of the porcine proximal colon in response to Trichuris suis infection, 53 days post-parasite inoculation.
4,19,22,39,48,49,72,92,98,107,108
8,11,14,15
<_link_ParasiteSpecies>4
<_link_InfectedSpecies>4
<_link_SampleSite>128
<_link_SampleType>8
2019-06-18T19:30:29.71+00:00
2019-06-25T15:43:37.8+00:00
true
54
1e9b8ff7-6e52-46d8-ab05-523e42fc7155
2012_3
4
1
64
https://doi.org/10.1128/IAI.00141-12
Alterations in the porcine colon microbiota induced by the gastrointestinal nematode Trichuris suis
1
2012
Li RW, Wu S, Li W, Navarro K, Couch RD, Hill D, Urban JF Jr.
true
6
PRJNA518074
0
0
0
This study characterised the microbiota composition of the porcine proximal colon in response to Trichuris suis infection, 21 days post-parasite inoculation.
11,18,33,37,39,47,70,75,76,81,83,92,94,95,98,99,104
5
<_link_ParasiteSpecies>4
<_link_InfectedSpecies>4
<_link_SampleSite>128
<_link_SampleType>8
2019-06-18T19:44:24.7+00:00
2019-07-04T11:54:21+00:00
true
55
492a1395-4be4-4854-903b-df4c5eabcbba
2013_1
5
2
4
https://doi.org/10.1371/journal.pone.0076573
Patent human infections with the whipworm, Trichuris trichiura, are not associated with alterations in the faecal microbiota
20
2013
Cooper P, Walker AW, Reyes J, Chico M, Salter SJ, Vaca M, Parkhill J
true
2
ERP002465
2
2
0
This study characterised the faecal microbiota of 97 children, ie. 30 uninfected, 17 infected with Trichuris trichiura, and 50 with T. trichiura and Ascaris lumbricoides from Ecuador. Post-treatment samples were analyzed for 14 children initially infected with T. trichiura alone and for 21 uninfected children. Anthelmintic treatment of children with T. trichiura did not alter faecal microbiota composition.
29,101
<_link_InfectedSpecies>5
2019-06-20T09:41:55.75+00:00
2019-06-25T15:37:49.19+00:00
true
56
bf7455f2-2345-4312-87e2-cea880968e3a
2013_2
1
1
128
https://doi.org/10.1371/journal.pone.0074026
Small intestinal nematode infection of mice is associated with increased enterobacterial loads alongside the intestinal tract
20
2013
Rausch S, Held J, Fischer A, Heimesaat MM, Kühl AA, Bereswill S, Hartmann S
true
5
N/A
0
0
0
This study investigated intestinal microbiota changes in the ileum, cecum and colon of C57BL/6 mice infected my Heligmosomoides polygyrus at 14 days post-nematode infection. The altered microbiota composition was independent of the IL-4/-13 - STAT6 signaling axis, as infected IL-4Rα(-/-) mice showed a similar increase in enterobacterial loads.
14
12
13,58
<_link_ParasiteSpecies>1
<_link_InfectedSpecies>1
<_link_SampleSite>2,128,2048
<_link_SampleType>8
2019-06-20T09:48:10.19+00:00
2019-06-25T15:34:52.69+00:00
true
57
05e5beb4-6d63-428b-9f6e-3d75fc24d876
2013_3
7
1
4
https://doi.org/10.1096/fj.13-232751
Infection with the carcinogenic liver fluke Opisthorchis viverrini modifies intestinal and biliary microbiome
23
2013
Plieskatt JL, Deenonpoe R, Mulvenna JP, Krause L, Sripa B, Bethony JM, Brindley PJ
true
6
PRJNA188112
1
1
0
This study characterised differences in microbiota composition of bile and colorectal contents of Syrian golden hamsters 6 weeks post-experimental infection by Opisthorchis viverrini.
14,16,18,19,32,36
1,58,79,85
14
<_link_ParasiteSpecies>7
<_link_InfectedSpecies>7
<_link_SampleSite>512,1024
<_link_SampleType>8
2019-06-20T09:52:19.4+00:00
2019-07-04T11:57:29.39+00:00
true
58
cd06c96f-8f54-44f5-8b91-33b68e983bde
2014_1
5
2
8
https://doi.org/10.1371/journal.pntd.0002880
Helminth colonization is associated with increased diversity of the gut microbiota
18
2014
Lee SC, Tang MS, Lim YAL, Choy SH, Kurtz ZD, Cox LM, Gundra UM, Cho I, Bonneau R, Blaser MJ, Chua KH, Loke P
true
5
N/A
1
1
0
This compared the composition and diversity of bacterial communities from the fecal microbiota of 51 people from two villages in Malaysia, of which 36 were infected by helminths. Helminth-colonized individuals had greater species richness and number of observed OTUs with enrichment of Paraprevotellaceae, especially with Trichuris infection.
2,17,20
3,27,37
17,25
2,3,19
<_link_ParasiteSpecies>8
<_link_InfectedSpecies>5
<_link_SampleType>2
2019-06-20T09:58:11.98+00:00
2019-07-04T11:59:22.47+00:00
true
59
0dd86c44-3c80-428d-bfbc-69910745138c
2014_2
5
1
4
https://doi.org/10.1093/infdis/jiu256
Impact of experimental hookworm infection on the human gut microbiota
24
2014
Cantacessi C, Giacomin P, Croese J, Zakrzewski M, Sotillo J, McCann L, Nolan MJ, Mitreva M, Krause L, Loukas A
true
6
SRP041283
0
0
0
This study characterized the differences in composition and relative abundance of fecal microbial communities in human subjects prior to and 8 weeks following experimental infection with Necator americanus.
<_link_ParasiteSpecies>9
<_link_InfectedSpecies>5
<_link_SampleType>2
2019-06-20T10:02:52.23+00:00
2019-06-25T14:54:06.32+00:00
true
60
18b0e7d7-4506-41d5-820c-905bfb50f73d
2014_3
1
1
64
https://doi.org/10.4161/gmic.32155
Commensal–pathogen interactions in the intestinal tract: Lactobacilli promote infection with, and are promoted by, helminth parasites
9
2014
Reynolds LA, Smith KA, Filbey KJ, Harcus Y, Hewitson JP, Redpath SA, Valdez Y, Yebra MJ, Finlay BB, Maizels RM
true
5
N/A (clone library)
0
0
0
This study showed that abundance of Lactobacillus bacteria correlates positively with infection with Heligmosomoides polygyrus, as well as with heightened regulatory T cell (Treg) and Th17 responses. H. polygyrus infection raised Lactobacillus species abundance in the duodenum of susceptible C57BL/6 mice, but not in relatively resistant BALB/c mice. Experimental administration of Lactobacillus taiwanensis to BALB/c mice elevates regulatory T cell frequencies and results in greater helminth establishment.
12,19
<_link_ParasiteSpecies>1
<_link_InfectedSpecies>1
<_link_SampleSite>32
<_link_SampleType>2,8
2019-06-20T10:06:41.97+00:00
2019-06-25T14:49:00.34+00:00
true
61
9e8949ea-c9ce-47bb-b94d-86aa4a31a8bb
2015_1
5
1
4
https://doi.org/10.1038/srep13797
Experimental hookworm infection and escalating gluten challenges are associated with increased microbial richness in celiac subjects
22
2015
Giacomin P, Zakrzewski M, Croese J, Su X, Sotillo J, McCann L, Navarro S, Mitreva M, Krause L, Loukas A, Cantacessi C
true
6
SRP059769
1
1
0
This study assessed the qualitative and quantitative changes in the microbiota of 8 human volunteers with coeliac disease prior to and following infection with Necator americanus, and 24, 36 and 52 weeks following challenge with escalating doses of dietary gluten.
<_link_ParasiteSpecies>9
<_link_InfectedSpecies>5
<_link_SampleType>2
2019-06-20T10:11:06.69+00:00
2019-06-25T14:45:03.97+00:00
true
62
74970d66-c899-4e02-aeb8-80b8ad36e04c
2015_2
1
1
8
https://doi.org/10.1371/journal.pone.0125495
Chronic Trichuris muris infection decreases diversity of the intestinal microbiota and concomitantly increases the abundance of Lactobacilli
20
2015
Holm JB, Sorobetea D, Kiilerich P, Ramayo-Caldas Y, Estellé J, Ma T, Madsen L, Kristiansen K, Svensson-Frej M
true
2
ERP006108
1
1
1
This study assessed the influence of low-dose chronic infection of C57BL/6 mice with Trichuris muris, using faecal samples collected at 13, 20 and 27 days post-infection, as well as luminal colon content samples collected at 35 days post-infection.
3,10
14,19
8,15,21,54,58,76,82,91,97
10,15
0
0
<_link_ParasiteSpecies>10
<_link_InfectedSpecies>1
<_link_SampleSite>2
<_link_SampleType>2,8
2019-06-20T10:24:22.11+00:00
2019-07-04T12:03:40.1+00:00
true
63
254fd3c6-1d67-469a-98d6-729b3c29dc37
2015_3
1
1
4
https://doi.org/10.1371/journal.pone.0125945
Chronic Trichuris muris infection in C57BL/6 mice causes significant changes in host microbiota and metabolome: effects reversed by pathogen clearance
20
2015
Houlden A, Hayes KS, Bancroft AJ, Worthington JJ, Wang P, Grencis RK, Roberts IS
true
2
ERP008663
2
2
0
This study investigated gut microbial communities of C57BL/6 mice infected by Trichuris muris profiled using DGGE, 454 pyrosequencing, and metabolomics. Changes in microbial composition occurred between 14 and 28 days post infection, resulting in significant changes in α and β- diversity. This impact was dominated by a reduction in the diversity and abundance of Bacteroidetes, specifically Prevotella and Parabacteroides. Metabolomic analysis of stool samples of infected mice at day 41 showed significant differences to uninfected controls with a significant increase in the levels of a number of essential amino acids and a reduction in breakdown of dietary plant derived carbohydrates. Following clearance of infection the intestinal microbiota underwent additional changes gradually transitioning by day 91 towards a microbiota of an uninfected animal.
71,80,84
3
<_link_ParasiteSpecies>10
<_link_InfectedSpecies>1
<_link_SampleType>2
2019-06-20T10:29:14.49+00:00
2019-06-25T14:31:57.99+00:00
true
64
30c9b0b3-888f-4676-b5b7-fb5b644515fa
2015_4
1
1
8
https://doi.org/10.1186/s40168-015-0103-8
Type 2 immunity-dependent reduction of segmented filamentous bacteria in mice infected with the helminthic parasite Nippostrongylus brasiliensis
2
2015
Fricke WF, Song Y, Wang AJ, Smith A, Grinchuk V, Pei C, Ma B, Lu N, Urban JF Jr, Shea-Donohue T, Zhao A
true
6
PRJNA255974
0
0
0
This study demonstrated that the effects of Nippostrongylus braziliensis infection on the composition of the murine gut microbiota, host antimicrobial proteins (AMP) and IL-17 expression, were attenuated in STAT6 -/- and IL-13 -/- knockout mice.
6,8,19,30,37,39
1,2,9
3
<_link_ParasiteSpecies>11
<_link_InfectedSpecies>1
<_link_SampleSite>64
<_link_SampleType>2,8
2019-06-20T10:33:35.32+00:00
2019-07-05T09:49:50.09+00:00
true
65
dfd433aa-c09c-4403-8373-c272fc4c2dd3
2015_5
0
2
4
https://10.1098/rstb.2014.0295
Interactions between multiple helminths and the gut microbiota in wild rodents
17
2015
Kreisinger J, Bastien G, Hauffe HC, Marchesi J, Perkins SE
false
2
ERP009377
0
0
1
This stud investigated the association between microbiota diversity and composition and natural infection of multiple helminth species in 29 wild mice (Apodemus flavicollis) infected by Heligmosomoides polygyrus, Syphacia spp. and Hymenolepis spp. Within this wild rodent system, variation in the composition and abundance of gut microbial taxa associated with helminths was specific to each helminth species and occurred both up- and downstream of a given helminth's niche. The most pronounced helminth–microbiota association was between the presence of tapeworms in the small intestine and increased S24–7 (Bacteroidetes) family in the stomach.
19,37
2,9
<_link_ParasiteSpecies>1,13,12
<_link_InfectedSpecies>11
<_link_SampleSite>2,128,2048,256
<_link_SampleType>8,16
2019-06-20T10:40:31.99+00:00
2019-06-25T14:23:53.62+00:00
true
66
7809be47-46cd-470c-b8ae-e8511641f0c6
2015_6
12
1
8
https://doi.org/10.1080/19490976.2015.1047128
Alteration of the rat cecal microbiome during colonization with the helminth Hymenolepis diminuta
9
2015
McKenney EA, Williamson L, Yoder AD, Rawls JF, Bilbo SD, Parker W
true
6
PRJNA270622
0
0
0
In this study, the microbiome of the cecum in Sprague Dawley rats colonized for 2 generations with the small intestinal helminth Hymenolepis diminuta was evaluated.
3,6
30
110
<_link_ParasiteSpecies>13
<_link_InfectedSpecies>12
<_link_SampleSite>2
<_link_SampleType>8
2019-06-20T10:45:59.35+00:00
2019-07-04T12:07:54.55+00:00
true
67
978d08a7-610b-4cfe-a3e1-ae89db549561
2015_7
0
2
4
https://doi.org/10.1016/j.ijpara.2015.04.001
(DOG) - Differences in the faecal microbiome of non-diarrhoeic clinically healthy dogs and cats associated with Giardia duodenalis infection: impact of hookworms and coccidia
11
2015
Šlapeta J, Dowd SE, Alanazi AD, Westman ME, Brown GK
false
6
PRJNA276586
0
0
0
This study compared the composition and diversity of bacterial communities from 40 dogs, including free-roaming dogs, and 21 surrendered cats from Australia. The dog cohort included 17 (42.5%) dogs positive for Giardia and 13 (32.5%) dogs positive for dog hookworm (Ancylostoma caninum). The cat samples included eight positive for Giardia and eight positive for Cystoisospora. In dogs, significant difference in faecal microbial profiles (at genus level) were observed between the Giardia-positive and -negative groups. No such difference was demonstrated between Ancylostoma-positive and -negative dogs.
13,18,24,29,51,55,86,87
<_link_ParasiteSpecies>142,31
<_link_InfectedSpecies>24,13
<_link_SampleType>2
2019-06-20T10:49:43.8+00:00
2019-07-04T12:12:40.52+00:00
true
68
64fbff77-e1e7-4d63-a52e-bc206c68791a
2016_1
5
1
8
https://doi.org/10.1038/srep36797
Changes in duodenal tissue-associated microbiota following hookworm infection and consecutive gluten challenges in humans with coeliac disease
22
2016
Giacomin P, Zakrzewski M, Jenkins TP, Su X, Al-Hallaf R, Croese J, de Vries S, Grant A, Mitreva M, Loukas A, Krause L, Cantacessi C
true
6
SRP078558
1
1
0
This study investigated the changes in gut microbiota microbiota composition at the site of infection by Necator americanus and gluten-dependent inflammation in 6 human volunteers with coeliac disease using biopsy tissue from the duodenum collected prior to infection, as well as 24 weeks post-infection (i.e. following the administration of 10–50 mg/day gluten from weeks 12–24) and 36 weeks post-infection (i.e. following the administration of twice-weekly 1 g/day gluten from weeks 24 to 36).
4,12
33,42
84
2,11
<_link_ParasiteSpecies>9
<_link_InfectedSpecies>5
<_link_SampleSite>32
<_link_SampleType>64
2019-06-20T10:53:55.63+00:00
2019-06-25T14:01:59.41+00:00
true
69
de777233-145b-482f-a1ce-dd412b9d6493
2016_2
14
1
4
https://doi.org/10.1371/journal.pone.0159770
Impact of helminth infections and nutritional constraints on the small intestine microbiota
20
2016
Cattadori IM, Sebastian A, Hao H, Katani R, Albert I, Eilertson KE, Kapur V, Pathak A, Mitchell S
true
5
Unavailable
2
2
0
This study used the Trichostrongylus retortaeformis-rabbit system to examine how the helminth infection and host restriction from coprophagy/ready-to-absorb nutrients affected the duodenal microbiota. Helminths reduced the diversity and abundance of the microbiota while the combination of parasites and coprophagic restriction led to a more diversified and abundant microbiota than infected cases, without significantly affecting the intensity of infection. Animals restricted from coprophagy and free from parasites exhibited the richest and most abundant bacterial community.
2,9,22,31,36
13,36,61,92
9,13,14
<_link_ParasiteSpecies>15
<_link_InfectedSpecies>14
<_link_SampleSite>32
<_link_SampleType>16
2019-06-20T10:58:36.22+00:00
2019-06-25T13:42:10.2+00:00
true
70
c8980ecc-3e4c-4064-abcc-e7fe74358925
2016_3
15
1
8
https://doi.org/10.1038/srep20606
The effect of helminth infection on the microbial composition and structure of the caprine abomasal microbiome
22
2016
Li RW, Li W, Sun J, Yu P, Baldwin RL, Urban JF Jr
true
4
mgp13390; mgm4629311.3 to mgm4629350.3
0
0
0
This study characterized the impact of H. contortus infection on the abomasal microbiome of 14 parasite naive goats inoculated with 5,000 H. contortus infective larvae and 6 age-matched uninfected controls, 50 days post-experimental infection.
18
103
17
7
9
<_link_ParasiteSpecies>16
<_link_InfectedSpecies>15
<_link_SampleSite>16
<_link_SampleType>8
2019-06-20T12:40:16.37+00:00
2019-07-04T12:18:24.77+00:00
true
71
d042a19b-fb24-425f-80c6-2837bb95b2de
2016_4
13
2
8
https://doi.org/10.1186/s13071-016-1908-4
Helminth infections and gut microbiota – a feline perspective
3
2016
Duarte AM, Jenkins TP, Latrofa MS, Giannelli A, Papadopoulos E, Madeira de Carvalho L, Nolan MJ, Otranto D, Cantacessi C
true
6
PRJNA349988
0
0
0
This study investigated qualitative and quantitative differences in faecal microbial profiles between cats with patent infections by Toxocara cati (n = 24) and uninfected controls (n = 21).
7,14
7,13
20,32,39,42,56,58,92
6,15
1
<_link_ParasiteSpecies>17
<_link_InfectedSpecies>13
<_link_SampleType>2
2019-06-20T12:44:18.12+00:00
2019-07-04T12:19:52.54+00:00
true
72
e897b9e1-445b-4ea2-9dde-a7911d312fdd
2017_1
5
2
8
https://doi.org/10.1371/journal.pone.0184719
Infections by human gastrointestinal helminths are associated with changes in faecal microbiota diversity and composition
20
2017
Jenkins TP, Rathnayaka Y, Perera PK, Peachey LE, Nolan MJ, Krause L, Rajakaruna RS, Cantacessi C
true
6
PRJEB21999
0
0
1
This study explored the qualitative and quantitative differences between the microbial community profiles of cohorts of human volunteers from Sri Lanka with patent infection by one or more parasitic nematode species (H+ = 11), as well as that of uninfected subjects (H- = 11) and of volunteers who had been subjected to regular prophylactic anthelmintic treatment (Ht = 11). No significant differences in alpha diversity (Shannon) and richness between groups were detected; however, beta diversity was significantly increased in H+ and Ht when individually compared to H-volunteers. Among others, bacteria of the families Verrucomicrobiaceae and Enterobacteriaceae showed a trend towards increased abundance in H+, whereas the Leuconostocaceae and Bacteroidaceae showed a relative increase in H- and Ht respectively.
21
2,12,23,41
7,13,60
24
1
<_link_ParasiteSpecies>18,19,9,3
<_link_InfectedSpecies>5
<_link_SampleType>2
2019-06-20T12:49:01.79+00:00
2019-07-04T12:23:07.77+00:00
true
73
234a9b6d-cae9-42aa-8884-9580bfad0180
2017_2
12
1
8
https://doi.org/10.1371/journal.pone.0182205
A benign helminth alters the host immune system and the gut microbiota in a rat model system
20
2017
Wegener Parfrey L, Jirků M, Šíma R, Jalovecká M, Sak B, Grigore K, Jirků Pomajbíkova K
true
2
ERP014631
0
0
0
This study investigated the impact of infection by Hymenolepis diminuta on the gut microbial composition of a rat model system, prior to infection as well as at 10, 15, 30, 40, 50, 60, 70 and 80 days post-infection.
17
13,14,36
105,110
<_link_ParasiteSpecies>13
<_link_InfectedSpecies>12
<_link_SampleType>2
2019-06-20T12:53:33.29+00:00
2019-07-04T12:24:05.23+00:00
true
74
c2f19866-eaf5-4b19-a7d5-95247f60f183
2018_2
1
1
8
https://doi.org/10.1038/s41598-018-30412-x
Schistosoma mansoni infection is associated with quantitative and qualitative modifcations of the mammalian intestinal microbiota
22
2018
Jenkins TP, Peachey LE, Ajami NJ, MacDonald AS, Hsieh MH, Brindley PJ, Cantacessi C, Rinaldi G
true
3
10.17632/y8c7vpc8zp.1
2
2
1
This study characterised the fluctuations in the composition of the gut microbial flora of the small and large intestine, as well as the changes in abundance of individual microbial species, of Swiss-Webster mice experimentally infected with Schistosoma mansoni, prior to and following the onset of egg laying (at 28 and 50 days post-infection, respectively). A significant expansion in populations of bacteria of the Family Verrucomicrobiaceae (species Akkermansia muciniphila) was detected at both intestinal sites and at both time-points in infected mice in comparison to uninfected controls. Bacteria belonging to the Lactobacillaceae were also expanded in the large intestine of schistosome-infected mice mice at 28 days p.i., while those belonging to the Orders Bacteroidales, Coriobacteriales and Clostridiales were expanded in either the small intestine, i.e. Bacteroides acidifaciens, Lachnospiraceae, and/or large intestine of infected mice at 50 days p.i., i.e. Bacteroides acidifaciens, Parabacteroides, Adlercreutzia, Lachnospiraceae, Oscillospira. Conversely, a marked contraction of bacteria of the Class Erysipelotrichia was evident at both small and large intestine of helminth-infected mice at day 50 p.i. compared to uninfected controls.
11,21
2,6,8,18,19,32,41
5,7,8,13,39,58,77,80,110
2,6,15,23,24
16
1,2,7,8
<_link_ParasiteSpecies>20
<_link_InfectedSpecies>1
<_link_SampleSite>8,64
<_link_SampleType>8
2019-06-20T13:09:12.96+00:00
2019-07-04T12:34:44.7+00:00
true
75
4d94b0a7-6449-4caa-b40d-48d9775ba024
2018_3
5
2
8
https://doi.org/10.1186/s13071-018-2739-2
Investigations on the interplays between Schistosoma mansoni, praziquantel and the gut microbiome
3
2018
Schneeberger PHH, Coulibaly JT, Panic G, Daubenberger C, Gueuning M, Frey JE, Keiser J
true
5
Unavailable
0
0
0
This study investigated differences in faecal microbiota composition between Schistosoma mansoni infected (n = 34) and uninfected children (n = 6) from Côte d'Ivoire. From each infected child one pre-treatment, one 24-hour and one 21-day follow-up sample after administration of 60 mg/kg praziquantel or placebo, were collected. The abundance of bacteria belonging to the order Fusobacteriales was significantly increased in the gut microbiota of cured individuals, both at baseline and 24 hours post-treatment.
13,19
1,4,5,17,29
22,50,57
1,4,5,12
10,13,16
5
<_link_ParasiteSpecies>20
<_link_InfectedSpecies>5
<_link_SampleType>2
2019-06-20T13:14:27.75+00:00
2019-07-04T12:37:58.23+00:00
true
76
2a9e5cb4-46b1-4fdb-bb68-5107415678b8
2018_4
1
1
4
https://doi.org/10.1038/mi.2017.20
Helminth-induced alterations of the gut microbiota exacerbate bacterial colitis
13
2018
Su C, Su L, Li Y, Long SR, Chang J, Zhang W, Walker WA, Xavier RX, Cherayil BJ, Shi HN
true
5
Unavailable
0
1
0
This study analyzed the fecal microbiota composition of Heligmosomoides polygyrus-infected and -uninfected BALB/C mice. Recipient mice of the gut microbiota from helminth-infected wide-type, but not STAT6-deficient, BALB/C donors displayed increased faecal pathogen shedding and exacerbation of Citrobacter-induced colitis compared to recipients of microbiota from control donors.
0
7,13,18,29,43,47,58
0
3,9
3
<_link_ParasiteSpecies>1
<_link_InfectedSpecies>1
<_link_SampleType>2
2019-06-20T13:17:51.76+00:00
2019-07-04T12:41:46.82+00:00
true
77
5cad4c32-31b4-4bd8-b3f2-ab6b38942af7
2018_5
5
2
4
https://doi.org/10.1371/journal.pntd.0006620
Dynamic changes in human-gut microbiome in relation to a placebo-controlled anthelminthic trial in Indonesia
18
2018
Martin I, Djuardi Y, Sartono E, Rosa BA, Supali T, Mitreva M, Houwing-Duistermaat JJ, Yazdanbakhsh M
true
7
nematode.net/ Indonesia_Microbiome.htm
0
0
0
This study investigated changes in the gut bacteria profiles of faecal samples from 150 human subjects enrolled in a double blind placebo controlled trial conducted in an area endemic for soil transmitted helminths in Indonesia. Either placebo or albendazole were given every three months for a period of one and a half years. Helminth infection was assessed before and at 3 months after the last treatment round. No differences were observed in terms of relative abundance of gut microbial species between helminth-infected and uninfected subjects and at post-treatment, and no differences were detected in gut microbiome composition between albendazole- and placebo-recipients. In subjects who remained infected post-anthelmintic treatment, a significant difference in microbiome composition between albendazole- and placebo-recipients was detected, and largely attributed to alterations in the abundance of Bacteroidetes. Albendazole was more effective against Ascaris lumbricoides and hookworms but not against Trichuris trichiura.
1,3
<_link_ParasiteSpecies>18,19,9,22,3
<_link_InfectedSpecies>5
<_link_SampleType>2
2019-06-20T13:22:58.47+00:00
2019-07-04T12:42:37.62+00:00
true
78
e4423a7b-1843-4e78-9ae4-44b03891ae8b
2018_6
5
2
8
10.1038/s41598-018-33937-3
A comprehensive analysis of the faecal microbiome and metabolome of Strongyloides stercoralis infected volunteers from a non-endemic area
22
2018
Jenkins TP, Formenti F, Castro C, Piubelli C, Perandin F, Buonfrate D, Otranto D, Griffin JL, Krause L, Bisoffi Z, Cantacessi C
true
3
10.17632/n86dtjvmbv.1)
1
1
0
This study explored the impact of natural mono-infections by the human parasite Strongyloides stercoralis on the faecal microbiota and metabolic profiles of a cohort of human volunteers from a non-endemic area of northern Italy (S+ = 20), pre- and post-anthelmintic treatment, and compared the findings with data obtained from a cohort of uninfected controls from the same geographical area (S- = 11). Samples from S+post-treatment subjects, displayed a significant decrease of bacteria belonging to the order Turicibacterales (genus Turicibacter) and an increase of Enterobacteriales (in particular associated to the genus Shigella) compared to corresponding samples from S+pre-treatment. Faecal metabolite analysis detected marked increases in the abundance of selected amino acids in S+ subjects, and of short chain fatty acids in S− subjects.
9,16
2,24
16,35,66,88
14,16,21
6,7
<_link_ParasiteSpecies>22
<_link_InfectedSpecies>5
<_link_SampleType>2
2019-06-20T13:28:27.09+00:00
2019-07-04T12:46:57.31+00:00
true
79
b839ff5b-2e01-4fa2-bad3-bde1c4d7e1ce
2018_7
19
2
8
https://doi.org/10.1016/j.ijpara.2017.11.003
The relationships between faecal egg counts and gut microbial composition in UK Thoroughbreds infected by cyathostomins
11
2018
Peachey LE, Molena RA, Jenkins TP, Di Cesare A, Traversa D, Hodgkinson JE, Cantacessi C
true
3
http://doi.org/10.17632/g7chkjrp8f.1
0
0
0
This study characterised the composition of the equine gut commensal flora associated with the presence, in faecal samples, of low (Clow = 18) and high (Chigh = 18) numbers of eggs of cyathostomin parasites prior to and 2 and 14 days following treatment with ivermectin. Anthelmintic treatment in Chigh was associated with a significant reduction of the bacterial Phylum TM7 14 days post-ivermectin administration, as well as a transient expansion of Adlercreutzia spp. at 2 days post-treatment.
0
12,23,33,34,36,39
83,87,110
9,18,23
4
<_link_ParasiteSpecies>23
<_link_InfectedSpecies>19
<_link_SampleType>2
2019-06-20T13:36:38.09+00:00
2019-07-04T12:44:47.99+00:00
true
80
cec3c02e-9028-427f-8acf-c9fb7a184098
2017_3
20
1
8
https://doi.org/10.1007/s11259-017-9698-5
Microbial community and ovine host response varies with early and late stages of Haemonchus contortus infection
25
2017
El-Ashram S, Al Nasr I, Abouhaje F, El-Kemary M, Huang G, Dinçel G, Mehmood R, Hu M, Suo X
false
5
Unavailable
1
1
1
This study investigated changes in abomasal microbial profiles of lambs experimentally infected with Haemonchus contortus, at 7 and 50 days post-infection, and compared to uninfected controls.
84
<_link_ParasiteSpecies>16
<_link_InfectedSpecies>20
<_link_SampleSite>16,4
<_link_SampleType>4
2019-06-20T13:41:40.86+00:00
2019-06-25T13:14:44.59+00:00
true
81
87a417df-cce9-4941-be3e-5ff8c1aaf7f0
2015_8
5
2
8
https://doi.org/10.1371/journal.pntd.0003861
Differences in the faecal microbiome in Schistosoma haematobium infected children vs. uninfected children
18
2015
Kay GL, Millard A, Sergeant MJ, Midzi N, Gwisai R, Mduluza T, Ivens A, Nausch N, Mutapi F, Pallen M
true
5
Unavailable
0
0
0
This study characterised the faecal microbiota profiles of children from the Murewa district in Zimbabwe infected by Schistosoma haematobium, pre- and post-treatment with praziquantel.
84
<_link_InfectedSpecies>5
<_link_SampleType>2
2019-06-21T12:09:26.14+00:00
2019-06-25T14:06:34.83+00:00
true
82
eb27df3b-807f-453c-b51e-5df363c04220
2016_5
12
1
8
https://doi.org/10.1016/j.bbi.2015.07.006
Got worms? Perinatal exposure to helminths prevents persistent immune sensitization and cognitive dysfunction induced by early-life infection
4
2016
Williamson LL, McKenney EA, Holzknecht ZE, Belliveau C, Rawls JF, Poulton S, Parker W, Bilbo SD
false
5
Unavailable
4
4
4
This study investigated the effect of Hymenolepis diminuta infection on the gut microbiome of newborn rats born from male and female Sprague–Dawley rats (infected six weeks prior to breeding) 21 days after birth.
3,6
<_link_ParasiteSpecies>13
<_link_InfectedSpecies>12
<_link_SampleSite>2
2019-06-21T12:14:23.38+00:00
2019-06-25T13:34:59.85+00:00
true
83
238b9b00-7112-4a7e-92b7-072fe759c999
2018_8
19
2
8
https://doi.org/10.3389/fphys.2018.00272
Strongyle infection and gut microbiota: profiling of resistant and susceptible horses over a grazing season
8
2018
Clark A, Sallé G, Ballan V, Reigner F, Meynadier A, Cortet J, Koch C, Riou M, Blanchard A, Mach N
true
2
PRJNA413884
0
0
0
This study investigated differences in faecal microbial profiles between female Welsh ponies (10 susceptible (S) and 10 resistant (R) to parasite infections) during 5 months on pasture. Samples for microbiota sequencing and analysis were collected prior to turn-out, as well as at 24, 43, 92 and 132 days post-turnout.
18
2,12,22,30,31,78,87,92
<_link_ParasiteSpecies>24
<_link_InfectedSpecies>19
<_link_SampleType>2
2019-06-21T12:20:20.1+00:00
2019-06-25T11:49:13.96+00:00
true
84
1dd7e3ef-3a3f-49e1-9629-13961e375753
2018_9
1
1
8
https://doi.org/10.1016/j.exppara.2018.08.002
Intestinal fluke Metagonimus yokogawai infection increases probiotic Lactobacillus in mouse cecum
5
2018
Kim JY, Kim EM, Yi M, Lee J, Lee S, Hwang Y, Yong D, Sohn WM, Yong TS
false
6
SRP154312
0
0
0
This study investigated qualitative and quantitative changes in caecal content microbiota from ICR mice 4 weeks following infection with Metagonimus yokogawai, in comparison with uninfected control mice.
6,14,26,32,35,37,38
2,9
2,4,6,7
<_link_ParasiteSpecies>25
<_link_InfectedSpecies>1
<_link_SampleSite>2
2019-06-21T12:29:07.1+00:00
2019-06-25T11:40:39.33+00:00
true
85
07cca994-9ce4-4c19-bc7f-241623245e39
2018_10
4
1
8
https://doi.org/10.3389/fimmu.2018.02557
Mucosal barrier and Th2 immune responses are enhanced by dietary inulin in pigs infected with Trichuris suis
6
2018
Myhill LJ, Stolzenbach S, Hansen TVA, Skovgaard K, Stensvold CR, O'Brien Andersen L, Nejsum P, Mejer H, Thamsborg SM, Williams AR
true
2
PRJEB29079
0
0
0
This study investigated the effects of Trichuris suis infection on the gut microbiota of pigs supplemented with inulin. Inulin supplementation reduced the abundance of bacterial phyla linked to inflammation, such as Proteobacteria and Firmicutes, and simultaneously increased Actinobacteria and Bacteroidetes. Pigs treated with both inulin and T. suis displayed the highest Bacteroidetes: Firmicutes ratio and the lowest gut pH.
19
84
3,9
<_link_ParasiteSpecies>4
<_link_InfectedSpecies>4
<_link_SampleSite>128
2019-06-21T12:51:56.15+00:00
2019-07-04T12:50:10.51+00:00
true
86
7023ef7b-e64c-40ba-bde7-e8a629d4e74d
2018_11
5
2
8
https://doi.org/10.3389/fmicb.2018.02292
Altered gut microbiota composition in subjects infected with Clonorchis sinensis
7
2018
Xu M, Jiang Z, Huang W, Yin J, Ou S, Jiang Y, Meng L, Cao S, Yu A, Cao J, Shen Y
true
6
SRP158183
0
0
0
This study characterised qualitative and quantitative differences in faecal microbial profiles between 47 volunteers infected by Clonorchis sinensis and 42 healthy controls from five rural communities from the Teng County, Guangxi Zhuang Autonomous Region, China.
6,13,17,23,27,28,29,38,39,40,41,42,44,57,62,64,67,68,73,80,81,89,92,97,100,111,112
3,5,15
3
<_link_ParasiteSpecies>26
<_link_InfectedSpecies>5
<_link_SampleType>2
2019-06-21T14:25:03.16+00:00
2019-06-25T12:39:13.29+00:00
true
87
da4b7dc2-d3e0-4192-9001-1a7c2b1ed415
2018_12
12
1
8
https://doi.org/10.1017/S0031182018000896
The benign helminth Hymenolepis diminuta ameliorates chemically induced colitis in a rat model system
15
2018
Pomajbíková KJ, Jirků M, Levá J, Sobotková K, Morien E, Parfrey LW
false
2
PRJEB25354
0
0
0
This study investigated the ability of different life cycle stages of H. diminuta to protect rats against a model of colitis induced through application of the haptenizing agent dinitrobenzene sulphonic acid (DNBS) directly to the colon, partly via modifications in gut microbiota composition. The gut microbiota was disrupted during the onset of colitis and did not appear to play an overt role in H. diminuta-mediated protection.
41
7,45,58,60
<_link_ParasiteSpecies>13
<_link_InfectedSpecies>12
<_link_SampleType>2
2019-06-21T14:38:52.36+00:00
2019-06-25T12:35:42.09+00:00
true
88
802d5ed7-c7a6-48cc-9617-ac852bada887
2018_13
1
1
4
DOI: 10.1126/sciadv.aap7399
Manipulation of host and parasite microbiotas: survival strategies during chronic nematode infection
21
2018
White EC, Houlden A, Bancroft AJ, Hayes KS, Goldrick M, Grencis RK, Roberts IS
true
2
PRJEB12611
0
0
1
This study investigated the impact of Trichuris muris–induced alterations in the host intestinal microbiota on the outcome of subsequent rounds of infection. The study demonstrated that a second infection by Trichuris muris resulted, therefore hatching in an altered host intestinal microbiota, resulted in significantly reduced worm burden compared to those infecting a naïve host intestinal microbiota.
33,35
3,9
<_link_ParasiteSpecies>10
<_link_InfectedSpecies>1
<_link_SampleSite>2
2019-06-21T14:43:15.24+00:00
2019-06-25T12:32:31.63+00:00
true
89
20ea7ab7-3969-4e86-b680-c20a72b1f9c2
2019_1
5
2
8
https://doi.org/10.7717/peerj.6200
Intestinal parasitic infection alters bacterial gut microbiota in children
16
2019
Toro-Londono MA, Bedoya-Urrego K, Garcia-Montoya GM, Galvan-Diaz AL, Alzate JF
true
6
PRJNA487588
2
2
0
This study investigated qualitative and quantitative differences in faecal microbiota composition between children infected by Cryptosporidium (n = 5), Giardia intestinalis (n = 6), and co-infected by Ascaris sp. and either Trichuris trichiura or Enterobius vermicularis or Giardia (n = 6). Samples from uninfected controls (n = 6) were also included. The latter group was characterised a type I enterotype (i.e. predominant Bacteroides spp.), whilst helminth- and protozoan-infected children are characterised by a type II enterotype (predominant Prevotella spp.).
2,33
13,84
<_link_ParasiteSpecies>19,143,39,30,31,3
<_link_InfectedSpecies>5
<_link_SampleType>2
2019-06-21T14:47:07.33+00:00
2019-06-25T10:35:15.06+00:00
true
90
9cc322a8-4b66-4ddd-ada9-3165e81f5879
2019_2
5
2
8
https://doi.org/10.1038/s41598-018-36709-1
Urogenital schistosomiasis is associated with signatures of microbiome dysbiosis in Nigerian adolescents
22
2019
Ajibola O, Rowan AD, Ogedengbe CO, Mshelia MB, Cabral DJ, Eze AA, Obaro S, Belenky P
true
1
https://repository.library.brown.edu/studio/item/bdr:698310/
0
0
1
This study investigated qualitative and quantitative differences in faecal microbiota composition between Schistosoma haematobium-infected (n = 24) and -uninfected (n = 25) young adolescents from the Argungu Local Government Area of Kebbi State, Nigeria.
1,5,6,8,13,15,17,18
3,10,14,25,28,29,33,36,40
3,9,29,34,37,38,53,64,69,74,80,83,84,102
5,7,12,13,17,18,20,22
4,9,13,15
<_link_ParasiteSpecies>27
<_link_InfectedSpecies>5
<_link_SampleType>2
2019-06-21T14:51:36.08+00:00
2019-07-04T12:56:57.37+00:00
true
91
b43c8f44-e4ab-40b0-8fcc-51c996985361
2019_3
1
1
8
https://doi.org/10.1007/s00436-018-6179-x
Chinese liver fluke Clonorchis sinensis infection changes the gut microbiome and increases probiotic Lactobacillus in mice
14
2019
Kim JY, Kim EM, Yi M, Lee J, Lee S, Hwang Y, Yong D, Sohn WM, Yong TS
false
5
Unavailable
0
0
0
This study investigated changes in the gut microbiome of C57BL/6 mice infected with Clonorchis sinensis metacercariae over time. Differences in gut microbiome composition between infected and uninfected mice were detected at 20 and 30 days post-infection, whereas no significant differences between groups were observed at 50 days post-infection.
58
7
<_link_ParasiteSpecies>26
<_link_InfectedSpecies>1
<_link_SampleType>2
2019-06-21T15:02:29.58+00:00
2019-07-04T10:27:01.97+00:00
true
92
0a414510-e7d8-4e9e-8e54-aa7a805d3652
2015_8
0
2
4
https://doi.org/10.1016/j.ijpara.2015.04.001
(CAT) Differences in the faecal microbiome of non-diarrhoeic clinically healthy dogs and cats associated with Giardia duodenalis infection: impact of hookworms and coccidia
11
2015
Šlapeta J, Dowd SE, Alanazi AD, Westman ME, Brown GK
false
6
PRJNA276586
0
0
0
This study compared the composition and diversity of bacterial communities from 40 dogs, including free-roaming dogs, and 21 surrendered cats from Australia. The dog cohort included 17 (42.5%) dogs positive for Giardia and 13 (32.5%) dogs positive for dog hookworm (Ancylostoma caninum). The cat samples included eight positive for Giardia and eight positive for Cystoisospora. In dogs, significant difference in faecal microbial profiles (at genus level) were observed between the Giardia-positive and -negative groups. No such difference was demonstrated between Ancylostoma-positive and -negative dogs.
13,18,24,29,51,55,86,87
<_link_ParasiteSpecies>142,31
<_link_InfectedSpecies>24,13
<_link_SampleType>2
2019-07-04T15:16:38.49+00:00
true
93
a39e1599-b817-4384-83f3-2ee9d48c84e5
2019_4
20
1
8
https://doi.org/10.1038/s41396-019-0462-4
Microbiome analysis as a platform R&D tool for parasitic nematode disease management
0
2019
Glenn Hogan, Sidney Walker, Frank Turnbull, Tania Curiao, Alison A. Morrison, Yensi Flores, Leigh Andrews, Marcus J. Claesson, Mark Tangney, Dave J. Bartley
false
5
New project number
2
2
0
This study investigated, pre-and post-infection, qualitative and quantitative changes in abomasum and feaces content microbiota of sheep co-infected with Haemonchus contortus and Teladorsagia circumcincta.
<_link_ParasiteSpecies>16
<_link_InfectedSpecies>20
<_link_SampleSite>16
<_link_SampleType>2
2019-07-28T23:20:07.91+00:00
true
94
3f91ce99-938f-4e57-839f-8256ef3b0ae5
2019_5
1
1
8
https://doi.org/10.3390/cells8060577
Contribution of the gut microbiota in P28GST-mediated anti-inflammatory effects: experimental and clinical insights
0
2019
Benoît Foligné , Coline Plé, Marie Titécat, Arnaud Dendooven, Aurélien Pagny, Catherine Daniel, Elisabeth Singer, Muriel Pottier, Benjamin Bertin, Christel Neut, Dominique Deplanque, Laurent Dubuquoy, Pierre Desreumaux, Monique Capron, Annie Standaert
false
0
New project number
1
0
0
This study investigatd the changes in the profiles of mice faecal microbiota at several time points of the P28GST-immunomodulation period.
<_link_ParasiteSpecies>145
<_link_InfectedSpecies>1
2019-07-28T23:21:35.53+00:00
true
95
8dc1fa22-3a00-4c68-9aaf-409b87821f55
2019_6
1
1
4
https://doi.org/10.1128/IAI.00275-19
Schistosoma mansoni worm infection regulates the intestinal microbiota and susceptibility to colitis
0
2019
Achilleas Floudasa, Gabriella Avielloa, Christian Schwartza, Ian B. Jefferyb, Paul W. O'Tooleb and Padraic G. Fallon
false
5
New project number
4
4
4
The study investigated the faecal microbiota profile of mice infected or with only adult male Schistosoma mansoni worms, or co-infected with adult male- and female-worms.
<_link_ParasiteSpecies>20
<_link_InfectedSpecies>1
2019-07-28T23:23:21.9+00:00
true
96
3c55975e-fdd4-4377-b2bb-67905b0f87e0
2019_7
5
2
8
https://doi.org/10.1128/mBio.00519-19
The impact of anthelmintic treatment on human gut microbiota based on cross-sectional and pre- and postdeworming comparisons in Western Kenya
0
2019
Alice V. Easton, Mariam Quiñones, Ivan Vujkovic-Cvijin, Rita G. Oliveira, Stella Kepha, Maurice R. Odiere, Roy M. Anderson, Yasmine Belkaid, Thomas B. Nutman
false
0
New project number
0
0
0
This study analysed the microbiota profiles of stool samples collected from residents of 5 rural Kenyan villages prior to and 3 weeks and 3 months following albendazole therapy, to provide new insight into the complex interplay among soil-transmitted helminths and human gut microbiome.
<_link_ParasiteSpecies>19,9
<_link_InfectedSpecies>5
2019-07-28T23:24:05.14+00:00
true
97
a2a7077f-95cd-4012-8282-929548e0ffd7
2019_8
19
2
8
https://doi.org/10.1016/j.ijpara.2019.02.003
Removal of adult cyathostomins alters faecal microbiota and promotes an inflammatory phenotype in horses
0
2019
Nicola Walshe, Vivienne Duggan, Raul Cabrera-Rubio, Fiona Crispie, Paul Cotter, Orna Feehan, Grace Mulcahy
false
0
New project number
1
1
4
In this study, authors studied changes in the faecal microbiota of two groups of horses, infected by cyathostomins, following treatment with anthelmintics (fenbendazole or moxidectin).
<_link_ParasiteSpecies>23
<_link_InfectedSpecies>19
2019-07-28T23:24:54.72+00:00
true
98
a6d40ad3-55f0-4f9a-92ee-507b1cd0b76d
2019_9
5
2
8
https://doi.org/10.4269/ajtmh.18-0968
Interactions between parasitic infections and the human gut microbiome in Odisha, India
29
2019
Tiffany Huwe, Birendra Kumar Prusty, Aisurya Ray, Shaun Lee, Balachandran Ravindran, Edwin Michael
true
0
0
0
0
1
In this study, authors investigated the human faecal microbiota profile associated with soil-transmitted helminth (Ascaris lumbricoides, Necator americanus, Trichuris trichiura) infections in the area of Odisha, India.
<_link_ParasiteSpecies>19,9,3
<_link_InfectedSpecies>5
<_link_SampleSite>0
<_link_SampleType>2
2019-08-05T10:59:19.32+00:00
2019-08-05T11:35:13.27+00:00
true
99
d0c95d03-7d0b-45ca-b4c9-93d374d291da
2019_10
1
1
8
https://doi.org/10.1128/IAI.00042-19
Suppression of obesity by an intestinal helminth through interactions with intestinal microbiota
1
2019
Chikako Shimokawa, Seiji Obi, Mioko Shibata, Alex Olia, Takashi Imai, Kazutomo Suzue, Hajime Hisaeda
true
0
New project number
4
4
4
This study investigated whether an intestinal nematode, Heligmosomoides polygyrus, has a suppressive role in diet-induced obesity in mice, altering the intestinal microbiota profile.
<_link_ParasiteSpecies>1
<_link_InfectedSpecies>1
<_link_SampleSite>0
<_link_SampleType>2
2019-08-05T11:06:07.34+00:00
true
100
ca75498e-2c75-44ad-b880-3ed20a37ac6c
2019_11
1
1
256
https://doi.org/10.1038/s41467-019-09361-0
The parasitic worm product ES-62 normalises the gut microbiota bone marrow axis in inflammatory arthritis
0
2019
James Doonan, Anuradha Tarafdar, Miguel A. Pineda, Felicity E. Lumb, Jenny Crowe, Aneesah M. Khan, Paul A. Hoskisson, Margaret M. Harnett, William Harnett
false
0
mgm4777616.3, 4777615.3, 4777614.3, 4777613.3, 4777481.3, 4777480.3, 4777479.3, 4777478.3, 4767994.3, 4767993.3, 4767992.3, 4767991.3, 4767990.3, 4767989.3, 4767988.3, 4767987.3, 4767986.3, 4738191.3, 4738190.3, 4738025.3, 4737887.3, 4737053.3 and 4737052.3
1
1
4
In this study, authors employ ES-62, an immunomodulator secreted by tissue-dwelling Acanthocheilonema viteae to show that helminth-modulation of the gut microbiome does not require live infection with gastrointestinal-based worms.
<_link_ParasiteSpecies>147,148
<_link_InfectedSpecies>1
2019-08-05T11:07:38.39+00:00
true
101
b5a6798d-572b-4337-91b6-fe6800e3a043
2019_12
1
1
8
https://doi.org/10.1371/journal.ppat.1007265
Exclusive dependence of IL-10Rα signalling on intestinal microbiota homeostasis and control of whipworm infection
19
2019
María A. Duque-Correa , Natasha A. Karp, Catherine McCarthy, Simon Forman, David Goulding, Geetha Sankaranarayanan, Timothy P. Jenkins, Adam J. Reid, Emma L. Cambridge, Carmen Ballesteros Reviriego, The Sanger Mouse Genetics Project, The 3i consortium , Werner Müller, Cinzia Cantacessi, Gordon Dougan, Richard K. Grencis, Matthew Berriman
false
2
ERP016361
2
2
1
This study analysed the role of the IL-10 family, an intestinal inflammatory responses mediators group, in the resistance of mice to infection with Trichuris muris, investigating the caecal microbiota profile.
<_link_ParasiteSpecies>10
<_link_InfectedSpecies>1
<_link_SampleSite>2
2019-08-05T11:09:57.87+00:00
true
102
9ff2fb8b-2a3c-4cd9-9dd0-7b9e308d83c1
2019_13
19
2
8
In press
Dysbiosis associated with acute helminth infections in herbivorous youngstock – observations and implications
22
2019
Laura E. Peachey, Cecilia Castro, Rebecca A. Molena, Timothy P. Jenkins, Julian L. Griffin, Cinzia Cantacessi
false
3
DOI: 10.17632/95m8sfd3kt.1
0
0
0
This study investigates, for the first time, the associations between acute infections by gastrointestinal helminths and the faecal microbial of a cohort of equine youngstock, prior to and following treatment with parasiticides (ivermectin).
<_link_ParasiteSpecies>146,24
<_link_InfectedSpecies>19
<_link_SampleType>2
2019-08-05T11:26:28.77+00:00
true
103
d781f0f1-2a07-45e5-96f8-64b3ab2be2aa
2019_14
4
1
8
https://doi.org/10.3389/fimmu.2018.02557
Mucosal barrier and Th2 immune responses are enhanced by dietary inulin in pigs infected with Trichuris suis
6
2019
Laura J. Myhill, Sophie Stolzenbach, Tina V. A. Hansen, Kerstin Skovgaard, C. Rune Stensvold, Lee O'Brien Andersen, Peter Nejsum, Helena Mejer, Stig M. Thamsborg, Andrew R. Williams
false
2
PRJEB29079
0
0
0
In this study, authors investigated the colon microbiota profile of pigs infected with the whipworm Trichuris suis and feeded with inulin.
<_link_ParasiteSpecies>4
<_link_InfectedSpecies>4
<_link_SampleSite>128
2019-08-05T11:28:11.36+00:00
true
104
b82fe7e3-7e91-43ad-869d-b6d24b158ec6
2019_15
0
1
8
10.3389/fcimb.2019.00217
Sequential Changes in the Host Gut Microbiota During Infection With the Intestinal Parasitic Nematode Strongyloides venezuelensis
0
2019
Tanzila Afrin, Kazunori Murase, Asuka Kounosu, Vicky L. Hunt, Mark Bligh, Yasunobu Maeda, Akina Hino, Haruhiko Maruyama, Isheng J. Tsai, and Taisei Kikuchi
true
0
SAMD00148911
0
0
0
TODO 2020-04-25
<_link_ParasiteSpecies>24
<_link_InfectedSpecies>1
<_link_SampleType>2
2020-05-24T15:33:57.04+00:00
true
105
2a889f5c-dfb2-4e84-9410-72700b9cba3a
2019_16
0
1
8
10.1038/s41598-019-44301-4
Cognitive and Microbiome Impacts of Experimental Ancylostoma ceylanicum Hookworm Infections in Hamsters
22
2019
Samuel C. Pan, Doyle V. Ward, Yunqiang Yin, Yan Hu, Mostafa A. Elfawal, Robert E. Clark, and Raffi V. Aroian
true
0
PRJNA535443
0
0
0
Here, authors studied the impact of a human hookworm parasite, Ancylostoma ceylanicum, in hamster gut microbiome
<_link_ParasiteSpecies>0
<_link_InfectedSpecies>7
<_link_SampleType>2
2020-05-24T15:38:08.09+00:00
true
106
ccb10f63-dce8-4001-809b-2f1a19645940
2019_17
0
1
8
10.1016/j.ijpara.2018.10.007
Ascaris suum infection was associated with a worm-independent reduction in microbial diversity and altered metabolic potential in the porcine gut microbiome.
11
2019
Yueying Wang, Fang Liu, Joseph F. UrbanJr., Oonagh Paerewijck, Peter Geldhof, Robert W.Li
false
0
SRP127199
0
0
0
In the present study, authors analized the effect of infection of Ascaris suum on the microbial composition in pigs
<_link_ParasiteSpecies>0
<_link_InfectedSpecies>4
<_link_SampleSite>128
<_link_SampleType>2
2020-05-24T16:05:40.39+00:00
true
107
9ec071f6-b707-45e4-845a-e44bac977771
2019_18
0
2
64
10.3389/fgene.2019.01028
The Effect of Gut Microbiome Composition on Human Immune Responses: An Exploration of Interference by Helminth Infections
0
2019
Ivonne Martin, Maria M. M. Kaisar, Aprilianto E. Wiria,Firdaus Hamid, Yenny Djuardi, Erliyani Sartono, Bruce A. Rosa, Makedonka Mitreva, Taniawati Supali, Jeanine J. Houwing-Duistermaat, Maria Yazdanbakhsh, and Linda J. Wammes
true
0
SAMN07688522 to SAMN07688545
0
0
0
In this study authors aim to analyze the relationship between bacterial communities with cytokine response in the presence or absence of helminth infections.
gcdsdbchj fr
<_link_InfectedSpecies>5
<_link_SampleType>2
2020-05-24T16:14:27.27+00:00
true
108
30d238fd-10c7-4a98-ab5b-3f9b2e449b2a
2019_19
0
2
8
10.1371/journal.ppat.1008066
Linking the effects of helminth infection, diet and the gut microbiota with human whole-blood signatures
19
2019
Soo Ching Lee, Mei San Tang, Alice V. Easton, Joseph Cooper Devlin, Ling Ling Chua, Ilseung Cho, Foong Ming Moy, Tsung Fei Khang, Yvonne A. L. Lim , P’ng Loke
true
2
PRJEB34956 and PRJEB34957
0
0
0
Here authors analyzed the relationship between fecal microbiota and Trichuris trichiura infection inindigenous Malaysians, referred to locally as Orang Asli, and urban participants from the capital city of Malaysia, Kuala Lumpur
<_link_ParasiteSpecies>3
<_link_InfectedSpecies>5
<_link_SampleType>2
2020-05-24T16:26:32.5+00:00
true
109
22ae3c60-7388-42bf-a87c-e4168520f980
2019_20
0
1
8
10.1016/j.jmii.2019.09.009
Trichinella spiralis infection decreases the diversity of the intestinal flora in the infected mouse.
0
2019
Sha Liu, Jin Pan, Xiangli Meng, Junping Zhu, Jie Zhou, Xinping Zhu
true
0
PRJNA479716 and PRJNA553325
0
0
0
This study aimed to explore the effect of Trichinella spiralis infection on the intestinal flora in mice
<_link_ParasiteSpecies>8
<_link_InfectedSpecies>1
<_link_SampleSite>0
<_link_SampleType>0
2020-05-24T16:31:22.61+00:00
true
110
b4cad7cc-6793-4e94-9fe9-09de05b5950a
2019_21
0
2
8
10.1016/j.meegid.2019.104010.
Exploring interactions between Blastocystis sp., Strongyloides spp. and the gut microbiomes of wild chimpanzees in Senegal
0
2019
Justinn Renelies-Hamilton, Marc Noguera-Julian, Mariona Parera, Roger Paredes, Liliana Pacheco, Elena Dacal, José M.Saugar, José M.Rubio, Michael Poulsen, Pamela C.Köster, David Carmena
false
6
PRJNA523828
0
0
0
Authors studied the interaction between gut microbiome and enteric parasites in chimpanzees.
<_link_ParasiteSpecies>22
<_link_InfectedSpecies>26
<_link_SampleType>2
2020-05-24T16:35:45.6+00:00
true
111
5ab8a210-c065-4a95-bcd2-d84ebd8dc423
2020_1
0
1
16
10.1016/j.vetmic.2020.108607
Gut microbial signatures associated with moxidectin treatment efficacy of Haemonchus contortus in infected goats.
0
2020
Fang Liu, Yue Xie, Anne M.Zajac, Yan Hu, Raffi V.Aroian, Joseph F.Urban Jr., Robert W.Li
false
6
PRJNA564780
0
0
0
In this study, authors examined the microbial composition and function in the abomasum, proximal colon and feces of Haemonchus contortus-infected goats after a partial anthelmintic drug clearance.
<_link_ParasiteSpecies>16
<_link_InfectedSpecies>15
<_link_SampleSite>16
2020-05-24T16:40:13.87+00:00
true
112
30dfbec5-f0ae-4ebc-9b0d-c7edbb6ef6b8
2020_2
0
1
8
10.1016/j.ijpara.2019.09.005
Infection with a small intestinal helminth, Heligmosomoides polygyrus bakeri, consistently alters microbial communities throughout the murine small and large intestine.
11
2020
Alexis Rapin, Audrey Chuat, Luc Lebon, Mario M. Zaiss, Benjamin J. Marsland, Nicola L. Harris
true
0
PRJEB32288
0
0
0
In the present study, author performed a comprehensive analysis of the impact of intestinal helminth infection on the mammalian intestinal bacterial microbiome. For this purpose, they investigated the impact of experimental infection using the natural murine small intestinal helminth, Heligmosomoides polygyrus and examined possible alterations in both the mucous and luminal bacterial communities along the entire small and large intestine.
<_link_ParasiteSpecies>1
<_link_InfectedSpecies>1
<_link_SampleSite>128
<_link_SampleType>2
2020-05-24T19:24:42.52+00:00
true
113
8ef7bb1d-f88e-4321-8b4b-fd859f0d5079
2020_3
0
1
8
10.1038/s41396-020-0589-3
The gut microbiota response to helminth infection depends on host sex and genotype.
26
2020
Fei Ling, Natalie Steinel, Jesse Weber, Lei Ma, Chris Smith, Decio Correa, Bin Zhu, Daniel Bolnick & Gaoxue Wang
false
10
PRJNA398629 and PRJNA398630
0
0
0
In this study, authors experimentally exposed Gasterosteus aculeatus to their naturally co-evolved parasite, Schistocephalus solidus.
<_link_ParasiteSpecies>0
<_link_InfectedSpecies>25
<_link_SampleSite>8
2020-05-24T19:29:00.89+00:00
true
114
4e838267-a325-452b-bbde-554a12aca08e
2020_4
0
1
8
10.1080/19490976.2019.1688065
Worm expulsion is independent of alterations in composition of the colonic bacteria that occur during experimental Hymenolepis diminuta-infection in mice.
9
2020
Adam Shute, Arthur Wang, Timothy S. Jayme, Marc Strous, Kathy D. McCoy, Andre G. Buret, Derek M. McKay
false
0
missing
0
0
0
In this study, authors analized the interaction between the tapeworm Hymenolepis diminuta and the gut microbiome in mice.
<_link_ParasiteSpecies>13
<_link_InfectedSpecies>1
<_link_SampleSite>128
<_link_SampleType>2
2020-05-24T19:34:02.73+00:00
true
115
3bac3628-8010-4fdc-b224-141b96e657f2
2020_5
0
1
8
10.1186/s40168-020-00818-9
Infection with the sheep gastrointestinal nematode Teladorsagia circumcincta increases luminal pathobionts
0
2020
Alba Cortés, John Wills, Xiaopei Su, Rachel E. Hewitt, Jack Robertson, Riccardo Scotti, Daniel R. G. Price, Yvonne Bartley, Tom N. McNeilly, Lutz Krause, Jonathan J. Powell, Alasdair J. Nisbet, Cinzia Cantacessi
true
2
PRJEB33114
0
0
0
In this study, authors investigated the fluctuations in microbiota composition of sheep vaccinated against, and experimentally infected with, the ‘brown stomach worm’ Teladorsagia circumcincta.
<_link_ParasiteSpecies>144
<_link_InfectedSpecies>20
<_link_SampleType>2
2020-05-24T19:37:54.61+00:00
true
116
87ccc1d8-f69b-460c-9b48-5a1a575122ad
2020_6
0
1
8
10.21203/rs.2.24428/v1
Experimental infection with the hookworm, Necator americanus, promotes gut microbial diversity in human volunteers with relapsing multiple sclerosis
0
2020
Timothy Jenkins, David Pritchard, Radu Tanasescu, Gary Telford, Marina Paraiakovou, Cris Constantinescu, Cinzia Cantacessi
true
3
10.17632/pkk4vtc57r.1
0
0
0
In the present study authors investigated qualitative and quantitative changes in gut microbial composition of human volunteers with remitting multiple sclerosis (RMS) prior to and following experimental infection with the human hookworm, Necator americanus, and following anthelmintic treatment, and compared the findings with data obtained from a cohort of RMS patients subjected to placebo treatment (PBO)
<_link_ParasiteSpecies>9
<_link_InfectedSpecies>5
<_link_SampleType>2
2020-05-24T19:46:02.09+00:00
true
49
11
2
49
21
1
56
14
1
58
2
1
58
17
1
58
20
1
62
3
1
62
10
2
66
3
2
66
6
1
68
4
1
68
12
1
71
7
1
71
14
2
72
21
1
73
17
1
74
11
2
74
21
1
75
13
1
75
19
2
78
9
2
78
16
2
79
0
82
3
2
82
6
1
90
1
1
90
5
2
90
6
2
90
8
1
90
13
1
90
15
2
90
17
2
90
18
1
100
6
1
48
14
1
48
18
2
49
29
2
50
6
1
50
14
2
50
19
1
52
2
2
52
11
1
52
29
1
52
36
1
56
12
1
57
14
2
57
16
2
57
18
1
57
19
1
57
32
2
57
36
1
58
3
2
58
27
1
58
37
1
60
12
1
60
19
1
62
14
2
62
19
1
64
6
2
64
8
1
64
19
1
64
30
2
64
37
1
64
39
2
65
19
1
65
37
1
66
30
1
68
33
1
68
42
1
69
2
2
69
9
1
69
22
1
69
31
2
69
36
2
70
18
2
71
7
1
71
13
1
72
2
2
72
12
1
72
23
1
72
41
1
73
13
1
73
14
2
73
36
1
74
2
1
74
6
2
74
8
1
74
18
1
74
19
1
74
32
1
74
41
1
75
1
2
75
4
2
75
5
2
75
17
1
75
29
2
76
0
78
2
2
78
24
2
79
12
2
79
23
1
79
33
1
79
34
2
79
36
1
79
39
1
83
18
2
84
6
1
84
14
2
84
26
1
84
32
2
84
35
2
84
37
2
84
38
2
85
19
1
87
41
1
88
33
2
88
35
2
89
2
2
89
33
1
90
3
1
90
10
1
90
14
2
90
25
1
90
28
1
90
29
1
90
33
1
90
36
2
90
40
1
98
43
2
100
2
1
100
6
2
100
18
2
100
32
1
100
36
1
101
12
1
101
13
1
101
19
1
102
13
2
102
19
2
102
33
2
102
44
2
102
45
2
102
46
2
48
8
1
48
29
1
48
32
1
48
37
1
48
42
2
48
74
1
48
89
2
48
104
1
49
13
1
51
46
1
51
102
2
52
13
2
52
83
2
52
92
2
53
4
2
53
19
2
53
22
1
53
39
2
53
48
2
53
49
2
53
72
2
53
92
2
53
98
2
53
107
2
53
108
2
54
11
2
54
18
2
54
33
2
54
37
1
54
39
2
54
47
2
54
70
1
54
75
2
54
76
2
54
81
1
54
83
2
54
92
2
54
94
2
54
95
2
54
98
2
54
99
2
54
104
2
55
29
1
55
101
1
56
13
1
56
58
1
57
1
1
57
58
1
57
79
1
57
85
2
58
17
2
58
25
2
62
8
2
62
15
2
62
21
1
62
54
1
62
58
1
62
70
1
62
76
1
62
82
1
62
91
2
62
97
1
63
71
1
63
80
2
63
84
2
66
110
2
67
13
2
67
18
1
67
24
1
67
29
1
67
51
1
67
55
1
67
86
2
67
87
1
68
84
1
69
13
2
69
36
1
69
61
1
69
92
2
70
103
1
71
20
2
71
32
1
71
39
1
71
42
1
71
56
2
71
58
1
71
92
1
72
7
1
72
13
2
72
60
1
73
105
2
73
110
2
74
5
1
74
7
1
74
8
2
74
13
1
74
39
1
74
58
1
74
77
1
74
80
1
74
110
2
75
22
2
75
50
2
75
57
1
76
7
1
76
13
1
76
18
1
76
29
2
76
43
2
76
47
2
76
58
2
78
16
2
78
35
2
78
66
2
78
88
2
79
83
1
79
87
2
79
110
1
80
84
1
81
84
1
83
2
1
83
12
1
83
22
1
83
30
1
83
31
2
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1024
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256
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84
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84
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84
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91
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1
0
TODO
true
d167b104-9c99-e911-abc4-000d3a228e9c
1
Brown Digital Repository
true
d267b104-9c99-e911-abc4-000d3a228e9c
2
European Nucleotide Archive (ENA)
true
d367b104-9c99-e911-abc4-000d3a228e9c
3
Mendeley
true
d467b104-9c99-e911-abc4-000d3a228e9c
4
MG-RAST
true
d567b104-9c99-e911-abc4-000d3a228e9c
5
Missing
true
d667b104-9c99-e911-abc4-000d3a228e9c
6
National Center for Biotechnology Information (NCBI)
true
d767b104-9c99-e911-abc4-000d3a228e9c
7
Nematode.net
true
d867b104-9c99-e911-abc4-000d3a228e9c
8
Not applicable (qPCR)
true
d967b104-9c99-e911-abc4-000d3a228e9c
9
DDBJ
true
2824263d-5e9e-ea11-96d2-281878342aac
10
SRA
true
2c176d4b-5e9e-ea11-96d2-281878342aac
0
None - no change
true
da67b104-9c99-e911-abc4-000d3a228e9c
1
Increase
true
db67b104-9c99-e911-abc4-000d3a228e9c
2
Decrease
true
dc67b104-9c99-e911-abc4-000d3a228e9c
4
Not assessed
true
dd67b104-9c99-e911-abc4-000d3a228e9c
1
Experimental
true
de67b104-9c99-e911-abc4-000d3a228e9c
2
Natural
true
df67b104-9c99-e911-abc4-000d3a228e9c
0
UNKNOWN
true
e067b104-9c99-e911-abc4-000d3a228e9c
1
Mouse (Mus musculus)
true
e167b104-9c99-e911-abc4-000d3a228e9c
2
Cattle (Bos taurus)
true
e267b104-9c99-e911-abc4-000d3a228e9c
3
Macaca mulatta - captive
true
e367b104-9c99-e911-abc4-000d3a228e9c
4
Pig (Sus scrofa domestica)
true
e467b104-9c99-e911-abc4-000d3a228e9c
5
Human (Homo Sapiens)
true
e567b104-9c99-e911-abc4-000d3a228e9c
7
Hamster (Mesocricetus auratus)
true
e667b104-9c99-e911-abc4-000d3a228e9c
11
Wild yellow-necked mouse (Apodemus flavicollis)
true
e767b104-9c99-e911-abc4-000d3a228e9c
12
Rat (Rattus norvegicus)
true
e867b104-9c99-e911-abc4-000d3a228e9c
13
Cat (Felis catus)
true
e967b104-9c99-e911-abc4-000d3a228e9c
14
Rabbits (Oryctolagus cuniculus)
true
ea67b104-9c99-e911-abc4-000d3a228e9c
15
Alpine Goat (Capra aegagrus hircus)
true
eb67b104-9c99-e911-abc4-000d3a228e9c
19
Horse (Equus ferus caballus)
true
ec67b104-9c99-e911-abc4-000d3a228e9c
20
Sheep (Ovis aries)
true
ed67b104-9c99-e911-abc4-000d3a228e9c
24
Dog (Canis lupus familiaris)
true
ee67b104-9c99-e911-abc4-000d3a228e9c
25
Three-spined stickleback (Gasterosteus aculeatus)
true
d2d115f7-5c9e-ea11-96d2-281878342aac
26
Chimpanzees (Pan troglodytes verus)
true
09bf0207-5d9e-ea11-96d2-281878342aac
0
TODO
true
ef67b104-9c99-e911-abc4-000d3a228e9c
1
Infection and Immunity (WAS: American Society for Microbiology Journals)
true
f067b104-9c99-e911-abc4-000d3a228e9c
2
Microbiome
true
f167b104-9c99-e911-abc4-000d3a228e9c
3
Parasites & Vectors
true
f267b104-9c99-e911-abc4-000d3a228e9c
4
Brain, Behavior, and Immunity
true
f367b104-9c99-e911-abc4-000d3a228e9c
5
Experimental Parasitology
true
f467b104-9c99-e911-abc4-000d3a228e9c
6
Frontiers in Immunology
true
f567b104-9c99-e911-abc4-000d3a228e9c
7
Frontiers in Microbiology
true
f667b104-9c99-e911-abc4-000d3a228e9c
8
Frontiers in Physiology
true
f767b104-9c99-e911-abc4-000d3a228e9c
9
Gut Microbes
true
f867b104-9c99-e911-abc4-000d3a228e9c
10
Inflammatory Bowel Diseases
true
f967b104-9c99-e911-abc4-000d3a228e9c
11
International Journal for Parasitology
true
fa67b104-9c99-e911-abc4-000d3a228e9c
13
Mucosal Immunology
true
fb67b104-9c99-e911-abc4-000d3a228e9c
14
Parasitology Research
true
fc67b104-9c99-e911-abc4-000d3a228e9c
15
Parasitology
true
fd67b104-9c99-e911-abc4-000d3a228e9c
16
PeerJ — the Journal of Life and Environmental Sciences
true
fe67b104-9c99-e911-abc4-000d3a228e9c
17
Philosophical Transactions of the Royal Society London B: Biolological Sciences
true
ff67b104-9c99-e911-abc4-000d3a228e9c
18
PLoS Neglected Tropical Diseases
true
0068b104-9c99-e911-abc4-000d3a228e9c
19
PLoS Pathogens
true
0168b104-9c99-e911-abc4-000d3a228e9c
20
PLoS One
true
0268b104-9c99-e911-abc4-000d3a228e9c
21
Science Advances
true
0368b104-9c99-e911-abc4-000d3a228e9c
22
Scientific Reports
true
0468b104-9c99-e911-abc4-000d3a228e9c
23
The FASEB Journal
true
0568b104-9c99-e911-abc4-000d3a228e9c
24
The Journal of Infectious Diseases
true
0668b104-9c99-e911-abc4-000d3a228e9c
25
Veterinary Research Communications
true
0768b104-9c99-e911-abc4-000d3a228e9c
26
The ISME Journal
true
57addbd1-8cb1-e911-bcd0-000d3a22804e
27
Cells
true
58addbd1-8cb1-e911-bcd0-000d3a22804e
28
mBio
true
e7497fdb-8cb1-e911-bcd0-000d3a22804e
29
The American Journal of Tropical Medicine and Hygiene
true
730d49ed-8cb1-e911-bcd0-000d3a22804e
30
Nature Communications Volume
true
46075dfc-8cb1-e911-bcd0-000d3a22804e
31
Veterinary Microbiology
true
d4f6444e-d29d-ea11-96d2-281878342aac
32
Frontiers in Cellular and Infection Microbiology
true
411cd659-d29d-ea11-96d2-281878342aac
33
Front. Genet
true
9c6db766-d29d-ea11-96d2-281878342aac
34
Infection, Genetics and Evolution
true
83391373-d29d-ea11-96d2-281878342aac
35
Gut microbes Journal
true
d8c1ba7d-d29d-ea11-96d2-281878342aac
36
mSystems
true
d9c1ba7d-d29d-ea11-96d2-281878342aac
37
Journal of Microbiology, Immunology and Infection
true
d564eb8c-d29d-ea11-96d2-281878342aac
0
TODO
true
0868b104-9c99-e911-abc4-000d3a228e9c
1
Heligmosomoides polygyrus
true
0968b104-9c99-e911-abc4-000d3a228e9c
2
Ostertagia ostertagi
true
0a68b104-9c99-e911-abc4-000d3a228e9c
3
Trichuris trichiura
true
0b68b104-9c99-e911-abc4-000d3a228e9c
4
Trichuris suis
true
0c68b104-9c99-e911-abc4-000d3a228e9c
7
Opisthorchis viverrini
true
0d68b104-9c99-e911-abc4-000d3a228e9c
8
Trichuris spp.
true
0e68b104-9c99-e911-abc4-000d3a228e9c
9
Necator americanus
true
0f68b104-9c99-e911-abc4-000d3a228e9c
10
Trichuris muris
true
1068b104-9c99-e911-abc4-000d3a228e9c
11
Nippostrongylus brasiliensis
true
1168b104-9c99-e911-abc4-000d3a228e9c
12
Syphacia spp.
true
1268b104-9c99-e911-abc4-000d3a228e9c
13
Hymenolepis diminuta
true
1368b104-9c99-e911-abc4-000d3a228e9c
14
Trichuris vulpis
true
1468b104-9c99-e911-abc4-000d3a228e9c
15
Trichostrongylus retortaeformis
true
1568b104-9c99-e911-abc4-000d3a228e9c
16
Haemonchus contortus
true
1668b104-9c99-e911-abc4-000d3a228e9c
17
Toxocara cati
true
1768b104-9c99-e911-abc4-000d3a228e9c
18
Ancylostoma duodenale
true
1868b104-9c99-e911-abc4-000d3a228e9c
19
Ascaris lumbricoides
true
1968b104-9c99-e911-abc4-000d3a228e9c
20
Schistosoma mansoni
true
1a68b104-9c99-e911-abc4-000d3a228e9c
22
Strongyloides stercoralis
true
1b68b104-9c99-e911-abc4-000d3a228e9c
23
Cyathostominae
true
1c68b104-9c99-e911-abc4-000d3a228e9c
24
Strongyles
true
1d68b104-9c99-e911-abc4-000d3a228e9c
25
Metagonimus yokogawai
true
1e68b104-9c99-e911-abc4-000d3a228e9c
26
Clonorchis sinensis
true
1f68b104-9c99-e911-abc4-000d3a228e9c
27
Schistosoma haematobium
true
2068b104-9c99-e911-abc4-000d3a228e9c
30
Enterobius vermicularis
true
2168b104-9c99-e911-abc4-000d3a228e9c
31
Giardia intestinalis
true
2268b104-9c99-e911-abc4-000d3a228e9c
39
Entamoeba hartmanni
true
2368b104-9c99-e911-abc4-000d3a228e9c
81
Ascaris spp.
true
2468b104-9c99-e911-abc4-000d3a228e9c
82
Hookworms
true
2568b104-9c99-e911-abc4-000d3a228e9c
121
Hymenolepsis spp.
true
2668b104-9c99-e911-abc4-000d3a228e9c
141
Cystoisospora rivolta
true
2768b104-9c99-e911-abc4-000d3a228e9c
142
Ancylostoma caninum
true
2868b104-9c99-e911-abc4-000d3a228e9c
143
Cryptosporidium
true
2968b104-9c99-e911-abc4-000d3a228e9c
144
Teladorsagia circumcincta
true
e0a53f4d-8db1-e911-bcd0-000d3a22804e
145
glutathione S-transferase (P28GST) from Schistosoma
true
87d3fd63-8db1-e911-bcd0-000d3a22804e
146
Anoplocephala perfoliata
true
510f0896-8db1-e911-bcd0-000d3a22804e
147
ES-62
true
b10c8c81-7cb7-e911-bcd0-000d3a228f37
148
glycoprotein from Acanthocheilonema viteae
true
b20c8c81-7cb7-e911-bcd0-000d3a228f37
150
Ancylostoma ceylanicum
true
5b81db4a-5d9e-ea11-96d2-281878342aac
151
Ascaris suum
true
1f23ba5a-5d9e-ea11-96d2-281878342aac
152
Trichinella spiralis
true
88771f77-5d9e-ea11-96d2-281878342aac
153
Blastocystis sp.
true
d3e22f9a-5d9e-ea11-96d2-281878342aac
154
Strongyloides spp.
true
276131a3-5d9e-ea11-96d2-281878342aac
155
Strongyloides venezuelensis
true
aae25fb7-5d9e-ea11-96d2-281878342aac
156
Schistocephalus solidus
true
0d7788c7-5d9e-ea11-96d2-281878342aac
4
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
true
2a68b104-9c99-e911-abc4-000d3a228e9c
8
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
true
2b68b104-9c99-e911-abc4-000d3a228e9c
16
Whole metagenome shotgun sequencing (Illumina)
true
2c68b104-9c99-e911-abc4-000d3a228e9c
32
Whole metagenome shotgun sequencing (Roche 454)
true
2d68b104-9c99-e911-abc4-000d3a228e9c
36
Whole metagenome shotgun sequencing (Roche 454), High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
true
2e68b104-9c99-e911-abc4-000d3a228e9c
64
Cloning and bacterial 16S rRNA amplicon qPCR
true
2f68b104-9c99-e911-abc4-000d3a228e9c
128
Bacterial 16S rRNA qPCR
true
3068b104-9c99-e911-abc4-000d3a228e9c
256
High throughput sequencing of 16S rRNA amplicons (Ion Torrent)
true
3168b104-9c99-e911-abc4-000d3a228e9c
0
None
true
3268b104-9c99-e911-abc4-000d3a228e9c
2
Caecum
true
3368b104-9c99-e911-abc4-000d3a228e9c
4
Rumen
true
3468b104-9c99-e911-abc4-000d3a228e9c
8
Large intestine
true
3568b104-9c99-e911-abc4-000d3a228e9c
16
Abomasum
true
3668b104-9c99-e911-abc4-000d3a228e9c
32
Duodenum
true
3768b104-9c99-e911-abc4-000d3a228e9c
64
Small intestine
true
3868b104-9c99-e911-abc4-000d3a228e9c
128
Colon
true
3968b104-9c99-e911-abc4-000d3a228e9c
256
Stomach
true
3a68b104-9c99-e911-abc4-000d3a228e9c
512
Bile ducts
true
3b68b104-9c99-e911-abc4-000d3a228e9c
1024
Colorectum
true
3c68b104-9c99-e911-abc4-000d3a228e9c
2048
Ileum
true
3d68b104-9c99-e911-abc4-000d3a228e9c
2050
COMPOUND: ileum, caecum
true
3e68b104-9c99-e911-abc4-000d3a228e9c
2178
COMPOUND: ileum, caecum, colon
true
3f68b104-9c99-e911-abc4-000d3a228e9c
4096
Liver
true
eaaa241b-72b7-e911-bcd0-000d3a228f37
0
None
true
4068b104-9c99-e911-abc4-000d3a228e9c
2
Faeces
true
4168b104-9c99-e911-abc4-000d3a228e9c
4
Fluids
true
4268b104-9c99-e911-abc4-000d3a228e9c
8
Lumen
true
4368b104-9c99-e911-abc4-000d3a228e9c
16
Mucosa
true
4468b104-9c99-e911-abc4-000d3a228e9c
64
Biopsy
true
4568b104-9c99-e911-abc4-000d3a228e9c
256
Blood
true
4668b104-9c99-e911-abc4-000d3a228e9c
0
-- N/A --
true
4768b104-9c99-e911-abc4-000d3a228e9c
1
Actinobacteria
true
4868b104-9c99-e911-abc4-000d3a228e9c
2
Alphaproteobacteria
true
4968b104-9c99-e911-abc4-000d3a228e9c
3
Bacilli
true
4a68b104-9c99-e911-abc4-000d3a228e9c
4
Bacteroidia
true
4b68b104-9c99-e911-abc4-000d3a228e9c
5
Betaproteobacteria
true
4c68b104-9c99-e911-abc4-000d3a228e9c
6
Clostridia
true
4d68b104-9c99-e911-abc4-000d3a228e9c
7
Coreobacteriia
true
4e68b104-9c99-e911-abc4-000d3a228e9c
8
Deltaproteobacteria
true
4f68b104-9c99-e911-abc4-000d3a228e9c
9
Endomicrobia
true
5068b104-9c99-e911-abc4-000d3a228e9c
10
Erysipelotrichi
true
5168b104-9c99-e911-abc4-000d3a228e9c
11
Erysipelotrichia
true
5268b104-9c99-e911-abc4-000d3a228e9c
12
Flavobacteria
true
5368b104-9c99-e911-abc4-000d3a228e9c
13
Fusobacteriia
true
5468b104-9c99-e911-abc4-000d3a228e9c
14
Gammaproteobacteria
true
5568b104-9c99-e911-abc4-000d3a228e9c
15
Melainabacteria
true
5668b104-9c99-e911-abc4-000d3a228e9c
16
Methanomicrobia
true
5768b104-9c99-e911-abc4-000d3a228e9c
17
Mollicutes
true
5868b104-9c99-e911-abc4-000d3a228e9c
18
Negativicutes
true
5968b104-9c99-e911-abc4-000d3a228e9c
19
Opitutae
true
5a68b104-9c99-e911-abc4-000d3a228e9c
20
Tenericutes
true
5b68b104-9c99-e911-abc4-000d3a228e9c
21
Verrucomicrobiae
true
5c68b104-9c99-e911-abc4-000d3a228e9c
0
-- N/A --
true
5d68b104-9c99-e911-abc4-000d3a228e9c
1
Increase
true
2
Decrease
true
0
-- N/A --
true
5e68b104-9c99-e911-abc4-000d3a228e9c
1
Anaeroplasmataceae
true
5f68b104-9c99-e911-abc4-000d3a228e9c
2
Bacteroidaceae
true
6068b104-9c99-e911-abc4-000d3a228e9c
3
Bifidobacteriaceae
true
6168b104-9c99-e911-abc4-000d3a228e9c
4
Campylobacteraceae
true
6268b104-9c99-e911-abc4-000d3a228e9c
5
Cerasiococcaceae
true
6368b104-9c99-e911-abc4-000d3a228e9c
6
Clostridiaceae
true
6468b104-9c99-e911-abc4-000d3a228e9c
7
Coriobacteriaceae
true
6568b104-9c99-e911-abc4-000d3a228e9c
8
Coriobacteriaceae
true
6668b104-9c99-e911-abc4-000d3a228e9c
9
Desulfobacteraceae
true
6768b104-9c99-e911-abc4-000d3a228e9c
10
Desulfovibrionaceae
true
6868b104-9c99-e911-abc4-000d3a228e9c
11
Elusimicrobiaceae
true
6968b104-9c99-e911-abc4-000d3a228e9c
12
Enterobacteriaceae
true
6a68b104-9c99-e911-abc4-000d3a228e9c
13
Enterococcaceae
true
6b68b104-9c99-e911-abc4-000d3a228e9c
14
Erysipelotrichaceae
true
6c68b104-9c99-e911-abc4-000d3a228e9c
15
Erysipelotrichaceaeileum
true
6d68b104-9c99-e911-abc4-000d3a228e9c
16
Eubacteriaceae
true
6e68b104-9c99-e911-abc4-000d3a228e9c
17
Fusobacteriaceae
true
6f68b104-9c99-e911-abc4-000d3a228e9c
18
Lachnospiraceae
true
7068b104-9c99-e911-abc4-000d3a228e9c
19
Lactobacillaceae
true
7168b104-9c99-e911-abc4-000d3a228e9c
20
Lactobacilluscrispatus
true
7268b104-9c99-e911-abc4-000d3a228e9c
21
Lactobacilluskitasatonis
true
7368b104-9c99-e911-abc4-000d3a228e9c
22
Leptospiraceae
true
7468b104-9c99-e911-abc4-000d3a228e9c
23
Leuconostocaceae
true
7568b104-9c99-e911-abc4-000d3a228e9c
24
Methanocorpusculaceae
true
7668b104-9c99-e911-abc4-000d3a228e9c
25
Moraxellaceae
true
7768b104-9c99-e911-abc4-000d3a228e9c
26
Odoribacteraceae
true
7868b104-9c99-e911-abc4-000d3a228e9c
27
Paraprevotellaceae
true
7968b104-9c99-e911-abc4-000d3a228e9c
28
Pasteurellaceae
true
7a68b104-9c99-e911-abc4-000d3a228e9c
29
Peptococcaceae
true
7b68b104-9c99-e911-abc4-000d3a228e9c
30
Peptostreptococcaceae
true
7c68b104-9c99-e911-abc4-000d3a228e9c
31
Phyromonadaceae
true
7d68b104-9c99-e911-abc4-000d3a228e9c
32
Porphyromonadaceae
true
7e68b104-9c99-e911-abc4-000d3a228e9c
33
Prevotellaceae
true
7f68b104-9c99-e911-abc4-000d3a228e9c
34
Pseudomonadaceae
true
8068b104-9c99-e911-abc4-000d3a228e9c
35
Rikenellaceae
true
8168b104-9c99-e911-abc4-000d3a228e9c
36
Ruminococcaceae
true
8268b104-9c99-e911-abc4-000d3a228e9c
37
S24-7
true
8368b104-9c99-e911-abc4-000d3a228e9c
38
Sutterellaceae
true
8468b104-9c99-e911-abc4-000d3a228e9c
39
Turicibacteraceae
true
8568b104-9c99-e911-abc4-000d3a228e9c
40
Veillonellaceae
true
8668b104-9c99-e911-abc4-000d3a228e9c
41
Verrucomicrobiaceae
true
8768b104-9c99-e911-abc4-000d3a228e9c
42
Weeksellacea
true
8868b104-9c99-e911-abc4-000d3a228e9c
43
Lachnospiracaea
true
3af71061-46f2-e911-a40b-281878345184
44
Mogibacteriaceae
true
df6eb5ed-48f2-e911-a40b-281878345184
45
Dehalobacteriaceae
true
e06eb5ed-48f2-e911-a40b-281878345184
46
Streptococcaceae
true
e16eb5ed-48f2-e911-a40b-281878345184
0
-- N/A --
true
8968b104-9c99-e911-abc4-000d3a228e9c
1
Acetanaerobacterium
true
8a68b104-9c99-e911-abc4-000d3a228e9c
2
Acetivibrio
true
8b68b104-9c99-e911-abc4-000d3a228e9c
3
Acinetobacter
true
8c68b104-9c99-e911-abc4-000d3a228e9c
4
Actinobacillus
true
8d68b104-9c99-e911-abc4-000d3a228e9c
5
Adlercreutzia
true
8e68b104-9c99-e911-abc4-000d3a228e9c
6
Agrobacterium
true
8f68b104-9c99-e911-abc4-000d3a228e9c
7
Akkermansia
true
9068b104-9c99-e911-abc4-000d3a228e9c
8
Allobaculum
true
9168b104-9c99-e911-abc4-000d3a228e9c
9
Alloprevotella
true
9268b104-9c99-e911-abc4-000d3a228e9c
10
Aquamicrobium
true
9368b104-9c99-e911-abc4-000d3a228e9c
11
Asteroleplasma
true
9468b104-9c99-e911-abc4-000d3a228e9c
12
Bacillus
true
9568b104-9c99-e911-abc4-000d3a228e9c
13
Bacteroides
true
9668b104-9c99-e911-abc4-000d3a228e9c
14
Bacteroidescaecum
true
9768b104-9c99-e911-abc4-000d3a228e9c
15
Barnsiella
true
9868b104-9c99-e911-abc4-000d3a228e9c
16
BF311
true
9968b104-9c99-e911-abc4-000d3a228e9c
17
Bifidobacterium
true
9a68b104-9c99-e911-abc4-000d3a228e9c
18
Blautia
true
9b68b104-9c99-e911-abc4-000d3a228e9c
19
Brachyspira
true
9c68b104-9c99-e911-abc4-000d3a228e9c
20
Bulleidia
true
9d68b104-9c99-e911-abc4-000d3a228e9c
21
Butyricicoccus
true
9e68b104-9c99-e911-abc4-000d3a228e9c
22
Campylobacter
true
9f68b104-9c99-e911-abc4-000d3a228e9c
23
Candidatus Arthromitus
true
a068b104-9c99-e911-abc4-000d3a228e9c
24
Catenibacterium
true
a168b104-9c99-e911-abc4-000d3a228e9c
25
CF231
true
a268b104-9c99-e911-abc4-000d3a228e9c
26
Chelatococcus
true
a368b104-9c99-e911-abc4-000d3a228e9c
27
Christensenella
true
a468b104-9c99-e911-abc4-000d3a228e9c
28
Cloacibacillus
true
a568b104-9c99-e911-abc4-000d3a228e9c
29
Clostridium
true
a668b104-9c99-e911-abc4-000d3a228e9c
30
ClostridiumIII
true
a768b104-9c99-e911-abc4-000d3a228e9c
31
ClsotridiumXIVa
true
a868b104-9c99-e911-abc4-000d3a228e9c
32
Collinsella
true
a968b104-9c99-e911-abc4-000d3a228e9c
33
Coprobacillus
true
aa68b104-9c99-e911-abc4-000d3a228e9c
34
Coriobacteriaceae
true
ab68b104-9c99-e911-abc4-000d3a228e9c
35
Dehalobacterium
true
ac68b104-9c99-e911-abc4-000d3a228e9c
36
Desulfocella
true
ad68b104-9c99-e911-abc4-000d3a228e9c
37
Desulfovibrio
true
ae68b104-9c99-e911-abc4-000d3a228e9c
38
Dialister
true
af68b104-9c99-e911-abc4-000d3a228e9c
39
Dorea
true
b068b104-9c99-e911-abc4-000d3a228e9c
40
Enhydrobacter
true
b168b104-9c99-e911-abc4-000d3a228e9c
41
Enterobacter
true
b268b104-9c99-e911-abc4-000d3a228e9c
42
Enterococcus
true
b368b104-9c99-e911-abc4-000d3a228e9c
43
Enterorhabdus
true
b468b104-9c99-e911-abc4-000d3a228e9c
44
Epulopiscium
true
b568b104-9c99-e911-abc4-000d3a228e9c
45
Escherichia
true
b668b104-9c99-e911-abc4-000d3a228e9c
46
Ethanoligenens
true
b768b104-9c99-e911-abc4-000d3a228e9c
47
Eubacterium
true
b868b104-9c99-e911-abc4-000d3a228e9c
48
Fibrobacter
true
b968b104-9c99-e911-abc4-000d3a228e9c
49
Francisella
true
ba68b104-9c99-e911-abc4-000d3a228e9c
50
Fructobacillus
true
bb68b104-9c99-e911-abc4-000d3a228e9c
51
Fusobacterium
true
bc68b104-9c99-e911-abc4-000d3a228e9c
52
Geobacillus
true
bd68b104-9c99-e911-abc4-000d3a228e9c
53
Haemophilus
true
be68b104-9c99-e911-abc4-000d3a228e9c
54
Halomonas
true
bf68b104-9c99-e911-abc4-000d3a228e9c
55
Howardella
true
c068b104-9c99-e911-abc4-000d3a228e9c
56
Jeotgalicoccus
true
c168b104-9c99-e911-abc4-000d3a228e9c
57
Klebsiella
true
c268b104-9c99-e911-abc4-000d3a228e9c
58
Lactobacillus
true
c368b104-9c99-e911-abc4-000d3a228e9c
59
Lactobacillusileum
true
c468b104-9c99-e911-abc4-000d3a228e9c
60
Lactococcus
true
c568b104-9c99-e911-abc4-000d3a228e9c
61
Leptomena
true
c668b104-9c99-e911-abc4-000d3a228e9c
62
Leucobacter
true
c768b104-9c99-e911-abc4-000d3a228e9c
63
Megamonas
true
c868b104-9c99-e911-abc4-000d3a228e9c
64
Megasphaera
true
c968b104-9c99-e911-abc4-000d3a228e9c
65
Meiothermus
true
ca68b104-9c99-e911-abc4-000d3a228e9c
66
Methanocorpusculum
true
cb68b104-9c99-e911-abc4-000d3a228e9c
67
Methylobacterium
true
cc68b104-9c99-e911-abc4-000d3a228e9c
68
Microbacterium
true
cd68b104-9c99-e911-abc4-000d3a228e9c
69
MollicutesRF9
true
ce68b104-9c99-e911-abc4-000d3a228e9c
70
Mucispirillum
true
cf68b104-9c99-e911-abc4-000d3a228e9c
71
Mucospirillium
true
d068b104-9c99-e911-abc4-000d3a228e9c
72
Mycoplasma
true
d168b104-9c99-e911-abc4-000d3a228e9c
73
Nevskia
true
d268b104-9c99-e911-abc4-000d3a228e9c
74
Olsenella
true
d368b104-9c99-e911-abc4-000d3a228e9c
75
Oribacterium
true
d468b104-9c99-e911-abc4-000d3a228e9c
76
Oscillibacter
true
d568b104-9c99-e911-abc4-000d3a228e9c
77
Oscillospira
true
d668b104-9c99-e911-abc4-000d3a228e9c
78
Paludibacter
true
d768b104-9c99-e911-abc4-000d3a228e9c
79
Papilibacter
true
d868b104-9c99-e911-abc4-000d3a228e9c
80
Parabacteroides
true
d968b104-9c99-e911-abc4-000d3a228e9c
81
Paraprevotella
true
da68b104-9c99-e911-abc4-000d3a228e9c
82
Parasutterella
true
db68b104-9c99-e911-abc4-000d3a228e9c
83
Peptococcus
true
dc68b104-9c99-e911-abc4-000d3a228e9c
84
Prevotella
true
dd68b104-9c99-e911-abc4-000d3a228e9c
85
Proteiniphilum
true
de68b104-9c99-e911-abc4-000d3a228e9c
86
Pseudobutyrivibrio
true
df68b104-9c99-e911-abc4-000d3a228e9c
87
Pseudomonas
true
e068b104-9c99-e911-abc4-000d3a228e9c
88
RFN20
true
e168b104-9c99-e911-abc4-000d3a228e9c
89
Rhodococcus
true
e268b104-9c99-e911-abc4-000d3a228e9c
90
Rosburia
true
e368b104-9c99-e911-abc4-000d3a228e9c
91
Roseburia
true
e468b104-9c99-e911-abc4-000d3a228e9c
92
Ruminococcus
true
e568b104-9c99-e911-abc4-000d3a228e9c
93
Schlegelella
true
e668b104-9c99-e911-abc4-000d3a228e9c
94
Schwartzia
true
e768b104-9c99-e911-abc4-000d3a228e9c
95
Selenomonas
true
e868b104-9c99-e911-abc4-000d3a228e9c
96
Silanimonas
true
e968b104-9c99-e911-abc4-000d3a228e9c
97
Sphingomonas
true
ea68b104-9c99-e911-abc4-000d3a228e9c
98
Spirochaeta
true
eb68b104-9c99-e911-abc4-000d3a228e9c
99
Sporobacter
true
ec68b104-9c99-e911-abc4-000d3a228e9c
100
Staphylococcus
true
ed68b104-9c99-e911-abc4-000d3a228e9c
101
Streptococcus
true
ee68b104-9c99-e911-abc4-000d3a228e9c
102
Subdoligranulum
true
ef68b104-9c99-e911-abc4-000d3a228e9c
103
Succiniclasticum
true
f068b104-9c99-e911-abc4-000d3a228e9c
104
Succinivibrio
true
f168b104-9c99-e911-abc4-000d3a228e9c
105
Sutterella
true
f268b104-9c99-e911-abc4-000d3a228e9c
106
Thermomonas
true
f368b104-9c99-e911-abc4-000d3a228e9c
107
Thermotoga
true
f468b104-9c99-e911-abc4-000d3a228e9c
108
Treponema
true
f568b104-9c99-e911-abc4-000d3a228e9c
109
Turibacter
true
f668b104-9c99-e911-abc4-000d3a228e9c
110
Turicibacter
true
f768b104-9c99-e911-abc4-000d3a228e9c
111
Variovorax
true
f868b104-9c99-e911-abc4-000d3a228e9c
112
Veillonella
true
f968b104-9c99-e911-abc4-000d3a228e9c
113
Alistipes
true
a6d31249-45f2-e911-a40b-281878345184
0
-- N/A --
true
fa68b104-9c99-e911-abc4-000d3a228e9c
0
-- N/A --
true
fb68b104-9c99-e911-abc4-000d3a228e9c
1
Anaeroplasmatales
true
fc68b104-9c99-e911-abc4-000d3a228e9c
2
Bacteroidales
true
fd68b104-9c99-e911-abc4-000d3a228e9c
3
Bifidobacteriales
true
fe68b104-9c99-e911-abc4-000d3a228e9c
4
Cerasiococcales
true
ff68b104-9c99-e911-abc4-000d3a228e9c
5
Clostridiales
true
0069b104-9c99-e911-abc4-000d3a228e9c
6
Coriobacteriales
true
0169b104-9c99-e911-abc4-000d3a228e9c
7
Desulfovibrionales
true
0269b104-9c99-e911-abc4-000d3a228e9c
8
Elusimicrobiales
true
0369b104-9c99-e911-abc4-000d3a228e9c
9
Enterobacterales
true
0469b104-9c99-e911-abc4-000d3a228e9c
10
Erysipelotrichales
true
0569b104-9c99-e911-abc4-000d3a228e9c
11
Flavobacteriales
true
0669b104-9c99-e911-abc4-000d3a228e9c
12
Fusobacteriales
true
0769b104-9c99-e911-abc4-000d3a228e9c
13
Gastranaerophilales
true
0869b104-9c99-e911-abc4-000d3a228e9c
14
GMD14H09
true
0969b104-9c99-e911-abc4-000d3a228e9c
15
Lactobacillales
true
0a69b104-9c99-e911-abc4-000d3a228e9c
16
Methanomicrobiales
true
0b69b104-9c99-e911-abc4-000d3a228e9c
17
Pasteurellales
true
0c69b104-9c99-e911-abc4-000d3a228e9c
18
Pseudomonadales
true
0d69b104-9c99-e911-abc4-000d3a228e9c
19
RF32
true
0e69b104-9c99-e911-abc4-000d3a228e9c
20
RF9
true
0f69b104-9c99-e911-abc4-000d3a228e9c
21
Rickettsiales
true
1069b104-9c99-e911-abc4-000d3a228e9c
22
Selenomonadales
true
1169b104-9c99-e911-abc4-000d3a228e9c
23
Turicibacterales
true
1269b104-9c99-e911-abc4-000d3a228e9c
24
Verrucomicrobiales
true
1369b104-9c99-e911-abc4-000d3a228e9c
0
-- N/A --
true
1469b104-9c99-e911-abc4-000d3a228e9c
1
Actinobacteria
true
1569b104-9c99-e911-abc4-000d3a228e9c
2
Bacteroides
true
1669b104-9c99-e911-abc4-000d3a228e9c
3
Bacteroidetes
true
1769b104-9c99-e911-abc4-000d3a228e9c
4
Cyanobacteria
true
1869b104-9c99-e911-abc4-000d3a228e9c
5
Deferribacteres
true
1969b104-9c99-e911-abc4-000d3a228e9c
6
Elusimicrobia
true
1a69b104-9c99-e911-abc4-000d3a228e9c
7
Euryarchaeota
true
1b69b104-9c99-e911-abc4-000d3a228e9c
8
Fibrobacteres
true
1c69b104-9c99-e911-abc4-000d3a228e9c
9
Firmicutes
true
1d69b104-9c99-e911-abc4-000d3a228e9c
10
Fusobacteria
true
1e69b104-9c99-e911-abc4-000d3a228e9c
11
Gammatimonadetes
true
1f69b104-9c99-e911-abc4-000d3a228e9c
12
Lachnospiraceae
true
2069b104-9c99-e911-abc4-000d3a228e9c
13
Proteobacteria
true
2169b104-9c99-e911-abc4-000d3a228e9c
14
Spirochaetes
true
2269b104-9c99-e911-abc4-000d3a228e9c
15
Tenericutes
true
2369b104-9c99-e911-abc4-000d3a228e9c
16
Verrucomicrobia
true
2469b104-9c99-e911-abc4-000d3a228e9c
17
Candidatus Saccharibacteria
true
9ef21880-57ee-e911-a40b-28187834307b
0
-- N/A --
true
2569b104-9c99-e911-abc4-000d3a228e9c
1
Akkermansia muciniphila
true
2669b104-9c99-e911-abc4-000d3a228e9c
2
Bacteroides acidifaciens
true
2769b104-9c99-e911-abc4-000d3a228e9c
3
Candidatus arthromitus SFB
true
2869b104-9c99-e911-abc4-000d3a228e9c
4
Clostridium cochleatum
true
2969b104-9c99-e911-abc4-000d3a228e9c
5
Enterobacter arachidis
true
2a69b104-9c99-e911-abc4-000d3a228e9c
6
Lactobacillus intestinalis
true
2b69b104-9c99-e911-abc4-000d3a228e9c
7
Lactobacillus reuteri
true
2c69b104-9c99-e911-abc4-000d3a228e9c
8
Ruminococcus gnavus
true
2d69b104-9c99-e911-abc4-000d3a228e9c
9
Selenomonas ruminantium
true
2e69b104-9c99-e911-abc4-000d3a228e9c