Study Details

Infection with a small intestinal helminth, Heligmosomoides polygyrus bakeri, consistently alters microbial communities throughout the murine small and large intestine.

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Main Data

Parasite and host species

Parasite Species 1
Heligmosomoides polygyrus
Infected Species 1
Mouse (Mus musculus)
Control Species
UNKNOWN
Infection Type
Experimental
Comments
In the present study, author performed a comprehensive analysis of the impact of intestinal helminth infection on the mammalian intestinal bacterial microbiome. For this purpose, they investigated the impact of experimental infection using the natural murine small intestinal helminth, Heligmosomoides polygyrus and examined possible alterations in both the mucous and luminal bacterial communities along the entire small and large intestine.

Publication and sequence data access

Authors
Alexis Rapin, Audrey Chuat, Luc Lebon, Mario M. Zaiss, Benjamin J. Marsland, Nicola L. Harris
Sequence Data Repository
TODO
Project Number
PRJEB32288
DOI
10.1016/j.ijpara.2019.09.005
Is Open Access
True
Journal
International Journal for Parasitology
Mdb ID
2020_2
Title
Infection with a small intestinal helminth, Heligmosomoides polygyrus bakeri, consistently alters microbial communities throughout the murine small and large intestine.
Year
2020

Sample Site and Type

Sample Sites 1
Colon
Sample Types 1
Faeces

Effect(s) of helminth infections on gut microbial diversity

Alpha Diversity - Evenness
None - no change
Alpha Diversity - Richness
None - no change
Beta Diversity - Change
None - no change

Bacterial Taxonomy

Legend   Increase   Decrease
Phylum 0
None
Class 0
None
Order 0
None
Family 0
None
Genus 0
None
Species 0
None

Related Data

Below you will find 0 related studies for Heligmosomoides polygyrus

Mdb ID Title Host Species Parasite Species

Below you will find 22 related studies for Mouse (Mus musculus)

Mdb ID Title Host Species Parasite Species

2020
1 2020_6
Details
DOI -
Open Access 		Experimental infection with the hookworm, Necator americanus, promotes gut microbial diversity in human volunteers with relapsing multiple sclerosis Human (Homo Sapiens) Necator americanus
Authors
Timothy Jenkins, David Pritchard, Radu Tanasescu, Gary Telford, Marina Paraiakovou, Cris Constantinescu, Cinzia Cantacessi
Host Species
Human (Homo Sapiens)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Necator americanus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Mendeley
Journal
TODO
Project Number
10.17632/pkk4vtc57r.1
DOI
2 2020_5
Details
DOI -
Open Access 		Infection with the sheep gastrointestinal nematode Teladorsagia circumcincta increases luminal pathobionts Sheep (Ovis aries) Teladorsagia circumcincta
Authors
Alba Cortés, John Wills, Xiaopei Su, Rachel E. Hewitt, Jack Robertson, Riccardo Scotti, Daniel R. G. Price, Yvonne Bartley, Tom N. McNeilly, Lutz Krause, Jonathan J. Powell, Alasdair J. Nisbet, Cinzia Cantacessi
Host Species
Sheep (Ovis aries)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Teladorsagia circumcincta
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
TODO
Project Number
PRJEB33114
DOI
3 2020_4
Details
DOI - 		Worm expulsion is independent of alterations in composition of the colonic bacteria that occur during experimental Hymenolepis diminuta-infection in mice. Mouse (Mus musculus) Hymenolepis diminuta
Authors
Adam Shute, Arthur Wang, Timothy S. Jayme, Marc Strous, Kathy D. McCoy, Andre G. Buret, Derek M. McKay
Host Species
Mouse (Mus musculus)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Hymenolepis diminuta
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
Colon
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
Gut Microbes
Project Number
missing
DOI
4 2020_2
Details
DOI -
Open Access 		Infection with a small intestinal helminth, Heligmosomoides polygyrus bakeri, consistently alters microbial communities throughout the murine small and large intestine. Mouse (Mus musculus) Heligmosomoides polygyrus
Authors
Alexis Rapin, Audrey Chuat, Luc Lebon, Mario M. Zaiss, Benjamin J. Marsland, Nicola L. Harris
Host Species
Mouse (Mus musculus)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Heligmosomoides polygyrus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
Colon
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
International Journal for Parasitology
Project Number
PRJEB32288
DOI
5 2020_1
Details
DOI - 		Gut microbial signatures associated with moxidectin treatment efficacy of Haemonchus contortus in infected goats. Alpine Goat (Capra aegagrus hircus) Haemonchus contortus
Authors
Fang Liu, Yue Xie, Anne M.Zajac, Yan Hu, Raffi V.Aroian, Joseph F.Urban Jr., Robert W.Li
Host Species
Alpine Goat (Capra aegagrus hircus)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Haemonchus contortus
Profiling Method
Whole metagenome shotgun sequencing (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
Abomasum
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
TODO
Project Number
PRJNA564780
DOI

2019
6 2019_9
Details
DOI -
Open Access 		Interactions between parasitic infections and the human gut microbiome in Odisha, India Human (Homo Sapiens) Ascaris lumbricoides,Necator americanus,Trichuris trichiura
Authors
Tiffany Huwe, Birendra Kumar Prusty, Aisurya Ray, Shaun Lee, Balachandran Ravindran, Edwin Michael
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Ascaris lumbricoides,Necator americanus,Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness Increase
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
The American Journal of Tropical Medicine and Hygiene
Project Number
0
DOI
7 2019_8
Details
DOI - 		Removal of adult cyathostomins alters faecal microbiota and promotes an inflammatory phenotype in horses Horse (Equus ferus caballus) Cyathostominae
Authors
Nicola Walshe, Vivienne Duggan, Raul Cabrera-Rubio, Fiona Crispie, Paul Cotter, Orna Feehan, Grace Mulcahy
Host Species
Horse (Equus ferus caballus)
Control Species
Horse (Equus ferus caballus)
Infection Type
Natural
Parasite Species
Cyathostominae
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness Not assessed
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
TODO
Project Number
New project number
DOI
8 2019_7
Details
DOI - 		The impact of anthelmintic treatment on human gut microbiota based on cross-sectional and pre- and postdeworming comparisons in Western Kenya Human (Homo Sapiens) Ascaris lumbricoides,Necator americanus
Authors
Alice V. Easton, Mariam Quiñones, Ivan Vujkovic-Cvijin, Rita G. Oliveira, Stella Kepha, Maurice R. Odiere, Roy M. Anderson, Yasmine Belkaid, Thomas B. Nutman
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Ascaris lumbricoides,Necator americanus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
TODO
Project Number
New project number
DOI
9 2019_6
Details
DOI - 		Schistosoma mansoni worm infection regulates the intestinal microbiota and susceptibility to colitis Mouse (Mus musculus) Schistosoma mansoni
Authors
Achilleas Floudasa, Gabriella Avielloa, Christian Schwartza, Ian B. Jefferyb, Paul W. O'Tooleb and Padraic G. Fallon
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Schistosoma mansoni
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Not assessed
Richness Not assessed
Beta diversity
Evenness Not assessed
Sample Site
None
Sample Type
None
Sequence Data Repository
Missing
Journal
TODO
Project Number
New project number
DOI
10 2019_5
Details
DOI - 		Contribution of the gut microbiota in P28GST-mediated anti-inflammatory effects: experimental and clinical insights Mouse (Mus musculus) glutathione S-transferase (P28GST) from Schistosoma
Authors
Benoît Foligné , Coline Plé, Marie Titécat, Arnaud Dendooven, Aurélien Pagny, Catherine Daniel, Elisabeth Singer, Muriel Pottier, Benjamin Bertin, Christel Neut, Dominique Deplanque, Laurent Dubuquoy, Pierre Desreumaux, Monique Capron, Annie Standaert
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
glutathione S-transferase (P28GST) from Schistosoma
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
TODO
Project Number
New project number
DOI
11 2019_4
Details
DOI - 		Microbiome analysis as a platform R&D tool for parasitic nematode disease management Sheep (Ovis aries) Haemonchus contortus
Authors
Glenn Hogan, Sidney Walker, Frank Turnbull, Tania Curiao, Alison A. Morrison, Yensi Flores, Leigh Andrews, Marcus J. Claesson, Mark Tangney, Dave J. Bartley
Host Species
Sheep (Ovis aries)
Control Species
Sheep (Ovis aries)
Infection Type
Experimental
Parasite Species
Haemonchus contortus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Decrease
Richness Decrease
Beta diversity
Evenness None - no change
Sample Site
Abomasum
Sample Type
Faeces
Sequence Data Repository
Missing
Journal
TODO
Project Number
New project number
DOI
12 2019_20
Details
DOI -
Open Access 		Trichinella spiralis infection decreases the diversity of the intestinal flora in the infected mouse. Mouse (Mus musculus) Trichuris spp.
Authors
Sha Liu, Jin Pan, Xiangli Meng, Junping Zhu, Jie Zhou, Xinping Zhu
Host Species
Mouse (Mus musculus)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Trichuris spp.
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
TODO
Project Number
PRJNA479716 and PRJNA553325
DOI
13 2019_19
Details
DOI -
Open Access 		Linking the effects of helminth infection, diet and the gut microbiota with human whole-blood signatures Human (Homo Sapiens) Trichuris trichiura
Authors
Soo Ching Lee, Mei San Tang, Alice V. Easton, Joseph Cooper Devlin, Ling Ling Chua, Ilseung Cho, Foong Ming Moy, Tsung Fei Khang, Yvonne A. L. Lim , P’ng Loke
Host Species
Human (Homo Sapiens)
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS Pathogens
Project Number
PRJEB34956 and PRJEB34957
DOI
14 2019_18
Details
DOI -
Open Access 		The Effect of Gut Microbiome Composition on Human Immune Responses: An Exploration of Interference by Helminth Infections Human (Homo Sapiens) None
Authors
Ivonne Martin, Maria M. M. Kaisar,  Aprilianto E. Wiria,Firdaus Hamid, Yenny Djuardi, Erliyani Sartono, Bruce A. Rosa,  Makedonka Mitreva, Taniawati Supali, Jeanine J. Houwing-Duistermaat,  Maria Yazdanbakhsh, and Linda J. Wammes
Host Species
Human (Homo Sapiens)
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
None
Profiling Method
Cloning and bacterial 16S rRNA amplicon qPCR
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
TODO
Project Number
SAMN07688522 to SAMN07688545
DOI
15 2019_17
Details
DOI - 		Ascaris suum infection was associated with a worm-independent reduction in microbial diversity and altered metabolic potential in the porcine gut microbiome. Pig (Sus scrofa domestica) TODO
Authors
Yueying Wang, Fang Liu, Joseph F. UrbanJr., Oonagh Paerewijck, Peter Geldhof, Robert W.Li
Host Species
Pig (Sus scrofa domestica)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
TODO
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
Colon
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
International Journal for Parasitology
Project Number
SRP127199
DOI
16 2019_16
Details
DOI -
Open Access 		Cognitive and Microbiome Impacts of Experimental Ancylostoma ceylanicum Hookworm Infections in Hamsters Hamster (Mesocricetus auratus) TODO
Authors
Samuel C. Pan, Doyle V. Ward, Yunqiang Yin, Yan Hu, Mostafa A. Elfawal, Robert E. Clark, and Raffi V. Aroian
Host Species
Hamster (Mesocricetus auratus)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
TODO
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
Scientific Reports
Project Number
PRJNA535443
DOI
17 2019_15
Details
DOI -
Open Access 		Sequential Changes in the Host Gut Microbiota During Infection With the Intestinal Parasitic Nematode Strongyloides venezuelensis Mouse (Mus musculus) Strongyles
Authors
Tanzila Afrin, Kazunori Murase, Asuka Kounosu, Vicky L. Hunt, Mark Bligh, Yasunobu Maeda, Akina Hino, Haruhiko Maruyama, Isheng J. Tsai, and Taisei Kikuchi
Host Species
Mouse (Mus musculus)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Strongyles
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
TODO
Project Number
SAMD00148911
DOI
18 2019_14
Details
DOI - 		Mucosal barrier and Th2 immune responses are enhanced by dietary inulin in pigs infected with Trichuris suis Pig (Sus scrofa domestica) Trichuris suis
Authors
Laura J. Myhill, Sophie Stolzenbach, Tina V. A. Hansen, Kerstin Skovgaard, C. Rune Stensvold, Lee O'Brien Andersen, Peter Nejsum, Helena Mejer, Stig M. Thamsborg, Andrew R. Williams
Host Species
Pig (Sus scrofa domestica)
Control Species
Pig (Sus scrofa domestica)
Infection Type
Experimental
Parasite Species
Trichuris suis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
Colon
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
Frontiers in Immunology
Project Number
PRJEB29079
DOI
19 2019_13
Details
DOI - 		Dysbiosis associated with acute helminth infections in herbivorous youngstock – observations and implications Horse (Equus ferus caballus) Anoplocephala perfoliata,Strongyles
Authors
Laura E. Peachey, Cecilia Castro, Rebecca A. Molena, Timothy P. Jenkins, Julian L. Griffin, Cinzia Cantacessi
Host Species
Horse (Equus ferus caballus)
Control Species
Horse (Equus ferus caballus)
Infection Type
Natural
Parasite Species
Anoplocephala perfoliata,Strongyles
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Mendeley
Journal
Scientific Reports
Project Number
DOI: 10.17632/95m8sfd3kt.1
DOI
20 2019_12
Details
DOI - 		Exclusive dependence of IL-10Rα signalling on intestinal microbiota homeostasis and control of whipworm infection Mouse (Mus musculus) Trichuris muris
Authors
María A. Duque-Correa , Natasha A. Karp, Catherine McCarthy, Simon Forman, David Goulding, Geetha Sankaranarayanan, Timothy P. Jenkins, Adam J. Reid, Emma L. Cambridge, Carmen Ballesteros Reviriego, The Sanger Mouse Genetics Project, The 3i consortium , Werner Müller, Cinzia Cantacessi, Gordon Dougan, Richard K. Grencis, Matthew Berriman
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Trichuris muris
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Decrease
Richness Decrease
Beta diversity
Evenness Increase
Sample Site
Caecum
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS Pathogens
Project Number
ERP016361
DOI
21 2019_11
Details
DOI - 		The parasitic worm product ES-62 normalises the gut microbiota bone marrow axis in inflammatory arthritis Mouse (Mus musculus) ES-62,glycoprotein from Acanthocheilonema viteae
Authors
James Doonan, Anuradha Tarafdar, Miguel A. Pineda, Felicity E. Lumb, Jenny Crowe, Aneesah M. Khan, Paul A. Hoskisson, Margaret M. Harnett, William Harnett
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
ES-62,glycoprotein from Acanthocheilonema viteae
Profiling Method
High throughput sequencing of 16S rRNA amplicons (Ion Torrent)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness Not assessed
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
TODO
Project Number
mgm4777616.3, 4777615.3, 4777614.3, 4777613.3, 4777481.3, 4777480.3, 4777479.3, 4777478.3, 4767994.3, 4767993.3, 4767992.3, 4767991.3, 4767990.3, 4767989.3, 4767988.3, 4767987.3, 4767986.3, 4738191.3, 4738190.3, 4738025.3, 4737887.3, 4737053.3 and 4737052.3
DOI
22 2019_10
Details
DOI -
Open Access 		Suppression of obesity by an intestinal helminth through interactions with intestinal microbiota Mouse (Mus musculus) Heligmosomoides polygyrus
Authors
Chikako Shimokawa, Seiji Obi, Mioko Shibata, Alex Olia, Takashi Imai, Kazutomo Suzue, Hajime Hisaeda
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Heligmosomoides polygyrus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Not assessed
Richness Not assessed
Beta diversity
Evenness Not assessed
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
Infection and Immunity (WAS: American Society for Microbiology Journals)
Project Number
New project number
DOI

Below you will find 44 related Experimental infection studies

Mdb ID Title Host Species Parasite Species

2020
1 2020_6
Details
DOI -
Open Access 		Experimental infection with the hookworm, Necator americanus, promotes gut microbial diversity in human volunteers with relapsing multiple sclerosis Human (Homo Sapiens) Necator americanus
Authors
Timothy Jenkins, David Pritchard, Radu Tanasescu, Gary Telford, Marina Paraiakovou, Cris Constantinescu, Cinzia Cantacessi
Host Species
Human (Homo Sapiens)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Necator americanus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Mendeley
Journal
TODO
Project Number
10.17632/pkk4vtc57r.1
DOI
2 2020_5
Details
DOI -
Open Access 		Infection with the sheep gastrointestinal nematode Teladorsagia circumcincta increases luminal pathobionts Sheep (Ovis aries) Teladorsagia circumcincta
Authors
Alba Cortés, John Wills, Xiaopei Su, Rachel E. Hewitt, Jack Robertson, Riccardo Scotti, Daniel R. G. Price, Yvonne Bartley, Tom N. McNeilly, Lutz Krause, Jonathan J. Powell, Alasdair J. Nisbet, Cinzia Cantacessi
Host Species
Sheep (Ovis aries)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Teladorsagia circumcincta
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
TODO
Project Number
PRJEB33114
DOI
3 2020_4
Details
DOI - 		Worm expulsion is independent of alterations in composition of the colonic bacteria that occur during experimental Hymenolepis diminuta-infection in mice. Mouse (Mus musculus) Hymenolepis diminuta
Authors
Adam Shute, Arthur Wang, Timothy S. Jayme, Marc Strous, Kathy D. McCoy, Andre G. Buret, Derek M. McKay
Host Species
Mouse (Mus musculus)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Hymenolepis diminuta
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
Colon
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
Gut Microbes
Project Number
missing
DOI
4 2020_3
Details
DOI - 		The gut microbiota response to helminth infection depends on host sex and genotype. Three-spined stickleback (Gasterosteus aculeatus) TODO
Authors
Fei Ling, Natalie Steinel, Jesse Weber, Lei Ma, Chris Smith, Decio Correa, Bin Zhu, Daniel Bolnick & Gaoxue Wang
Host Species
Three-spined stickleback (Gasterosteus aculeatus)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
TODO
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
Large intestine
Sample Type
None
Sequence Data Repository
SRA
Journal
The ISME Journal
Project Number
PRJNA398629 and PRJNA398630
DOI
5 2020_2
Details
DOI -
Open Access 		Infection with a small intestinal helminth, Heligmosomoides polygyrus bakeri, consistently alters microbial communities throughout the murine small and large intestine. Mouse (Mus musculus) Heligmosomoides polygyrus
Authors
Alexis Rapin, Audrey Chuat, Luc Lebon, Mario M. Zaiss, Benjamin J. Marsland, Nicola L. Harris
Host Species
Mouse (Mus musculus)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Heligmosomoides polygyrus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
Colon
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
International Journal for Parasitology
Project Number
PRJEB32288
DOI
6 2020_1
Details
DOI - 		Gut microbial signatures associated with moxidectin treatment efficacy of Haemonchus contortus in infected goats. Alpine Goat (Capra aegagrus hircus) Haemonchus contortus
Authors
Fang Liu, Yue Xie, Anne M.Zajac, Yan Hu, Raffi V.Aroian, Joseph F.Urban Jr., Robert W.Li
Host Species
Alpine Goat (Capra aegagrus hircus)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Haemonchus contortus
Profiling Method
Whole metagenome shotgun sequencing (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
Abomasum
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
TODO
Project Number
PRJNA564780
DOI

2019
7 2019_6
Details
DOI - 		Schistosoma mansoni worm infection regulates the intestinal microbiota and susceptibility to colitis Mouse (Mus musculus) Schistosoma mansoni
Authors
Achilleas Floudasa, Gabriella Avielloa, Christian Schwartza, Ian B. Jefferyb, Paul W. O'Tooleb and Padraic G. Fallon
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Schistosoma mansoni
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Not assessed
Richness Not assessed
Beta diversity
Evenness Not assessed
Sample Site
None
Sample Type
None
Sequence Data Repository
Missing
Journal
TODO
Project Number
New project number
DOI
8 2019_5
Details
DOI - 		Contribution of the gut microbiota in P28GST-mediated anti-inflammatory effects: experimental and clinical insights Mouse (Mus musculus) glutathione S-transferase (P28GST) from Schistosoma
Authors
Benoît Foligné , Coline Plé, Marie Titécat, Arnaud Dendooven, Aurélien Pagny, Catherine Daniel, Elisabeth Singer, Muriel Pottier, Benjamin Bertin, Christel Neut, Dominique Deplanque, Laurent Dubuquoy, Pierre Desreumaux, Monique Capron, Annie Standaert
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
glutathione S-transferase (P28GST) from Schistosoma
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
TODO
Project Number
New project number
DOI
9 2019_4
Details
DOI - 		Microbiome analysis as a platform R&D tool for parasitic nematode disease management Sheep (Ovis aries) Haemonchus contortus
Authors
Glenn Hogan, Sidney Walker, Frank Turnbull, Tania Curiao, Alison A. Morrison, Yensi Flores, Leigh Andrews, Marcus J. Claesson, Mark Tangney, Dave J. Bartley
Host Species
Sheep (Ovis aries)
Control Species
Sheep (Ovis aries)
Infection Type
Experimental
Parasite Species
Haemonchus contortus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Decrease
Richness Decrease
Beta diversity
Evenness None - no change
Sample Site
Abomasum
Sample Type
Faeces
Sequence Data Repository
Missing
Journal
TODO
Project Number
New project number
DOI
10 2019_3
Details
DOI - 		Chinese liver fluke Clonorchis sinensis infection changes the gut microbiome and increases probiotic Lactobacillus in mice Mouse (Mus musculus) Clonorchis sinensis
Authors
Kim JY, Kim EM, Yi M, Lee J, Lee S, Hwang Y, Yong D, Sohn WM, Yong TS
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Clonorchis sinensis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Missing
Journal
Parasitology Research
Project Number
Unavailable
DOI
11 2019_20
Details
DOI -
Open Access 		Trichinella spiralis infection decreases the diversity of the intestinal flora in the infected mouse. Mouse (Mus musculus) Trichuris spp.
Authors
Sha Liu, Jin Pan, Xiangli Meng, Junping Zhu, Jie Zhou, Xinping Zhu
Host Species
Mouse (Mus musculus)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Trichuris spp.
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
TODO
Project Number
PRJNA479716 and PRJNA553325
DOI
12 2019_17
Details
DOI - 		Ascaris suum infection was associated with a worm-independent reduction in microbial diversity and altered metabolic potential in the porcine gut microbiome. Pig (Sus scrofa domestica) TODO
Authors
Yueying Wang, Fang Liu, Joseph F. UrbanJr., Oonagh Paerewijck, Peter Geldhof, Robert W.Li
Host Species
Pig (Sus scrofa domestica)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
TODO
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
Colon
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
International Journal for Parasitology
Project Number
SRP127199
DOI
13 2019_16
Details
DOI -
Open Access 		Cognitive and Microbiome Impacts of Experimental Ancylostoma ceylanicum Hookworm Infections in Hamsters Hamster (Mesocricetus auratus) TODO
Authors
Samuel C. Pan, Doyle V. Ward, Yunqiang Yin, Yan Hu, Mostafa A. Elfawal, Robert E. Clark, and Raffi V. Aroian
Host Species
Hamster (Mesocricetus auratus)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
TODO
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
Scientific Reports
Project Number
PRJNA535443
DOI
14 2019_15
Details
DOI -
Open Access 		Sequential Changes in the Host Gut Microbiota During Infection With the Intestinal Parasitic Nematode Strongyloides venezuelensis Mouse (Mus musculus) Strongyles
Authors
Tanzila Afrin, Kazunori Murase, Asuka Kounosu, Vicky L. Hunt, Mark Bligh, Yasunobu Maeda, Akina Hino, Haruhiko Maruyama, Isheng J. Tsai, and Taisei Kikuchi
Host Species
Mouse (Mus musculus)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Strongyles
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
TODO
Project Number
SAMD00148911
DOI
15 2019_14
Details
DOI - 		Mucosal barrier and Th2 immune responses are enhanced by dietary inulin in pigs infected with Trichuris suis Pig (Sus scrofa domestica) Trichuris suis
Authors
Laura J. Myhill, Sophie Stolzenbach, Tina V. A. Hansen, Kerstin Skovgaard, C. Rune Stensvold, Lee O'Brien Andersen, Peter Nejsum, Helena Mejer, Stig M. Thamsborg, Andrew R. Williams
Host Species
Pig (Sus scrofa domestica)
Control Species
Pig (Sus scrofa domestica)
Infection Type
Experimental
Parasite Species
Trichuris suis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
Colon
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
Frontiers in Immunology
Project Number
PRJEB29079
DOI
16 2019_12
Details
DOI - 		Exclusive dependence of IL-10Rα signalling on intestinal microbiota homeostasis and control of whipworm infection Mouse (Mus musculus) Trichuris muris
Authors
María A. Duque-Correa , Natasha A. Karp, Catherine McCarthy, Simon Forman, David Goulding, Geetha Sankaranarayanan, Timothy P. Jenkins, Adam J. Reid, Emma L. Cambridge, Carmen Ballesteros Reviriego, The Sanger Mouse Genetics Project, The 3i consortium , Werner Müller, Cinzia Cantacessi, Gordon Dougan, Richard K. Grencis, Matthew Berriman
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Trichuris muris
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Decrease
Richness Decrease
Beta diversity
Evenness Increase
Sample Site
Caecum
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS Pathogens
Project Number
ERP016361
DOI
17 2019_11
Details
DOI - 		The parasitic worm product ES-62 normalises the gut microbiota bone marrow axis in inflammatory arthritis Mouse (Mus musculus) ES-62,glycoprotein from Acanthocheilonema viteae
Authors
James Doonan, Anuradha Tarafdar, Miguel A. Pineda, Felicity E. Lumb, Jenny Crowe, Aneesah M. Khan, Paul A. Hoskisson, Margaret M. Harnett, William Harnett
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
ES-62,glycoprotein from Acanthocheilonema viteae
Profiling Method
High throughput sequencing of 16S rRNA amplicons (Ion Torrent)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness Not assessed
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
TODO
Project Number
mgm4777616.3, 4777615.3, 4777614.3, 4777613.3, 4777481.3, 4777480.3, 4777479.3, 4777478.3, 4767994.3, 4767993.3, 4767992.3, 4767991.3, 4767990.3, 4767989.3, 4767988.3, 4767987.3, 4767986.3, 4738191.3, 4738190.3, 4738025.3, 4737887.3, 4737053.3 and 4737052.3
DOI
18 2019_10
Details
DOI -
Open Access 		Suppression of obesity by an intestinal helminth through interactions with intestinal microbiota Mouse (Mus musculus) Heligmosomoides polygyrus
Authors
Chikako Shimokawa, Seiji Obi, Mioko Shibata, Alex Olia, Takashi Imai, Kazutomo Suzue, Hajime Hisaeda
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Heligmosomoides polygyrus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Not assessed
Richness Not assessed
Beta diversity
Evenness Not assessed
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
Infection and Immunity (WAS: American Society for Microbiology Journals)
Project Number
New project number
DOI

2018
19 2018_9
Details
DOI - 		Intestinal fluke Metagonimus yokogawai infection increases probiotic Lactobacillus in mouse cecum Mouse (Mus musculus) Metagonimus yokogawai
Authors
Kim JY, Kim EM, Yi M, Lee J, Lee S, Hwang Y, Yong D, Sohn WM, Yong TS
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Metagonimus yokogawai
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
Caecum
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Experimental Parasitology
Project Number
SRP154312
DOI
20 2018_4
Details
DOI -
Open Access 		Helminth-induced alterations of the gut microbiota exacerbate bacterial colitis Mouse (Mus musculus) Heligmosomoides polygyrus
Authors
Su C, Su L, Li Y, Long SR, Chang J, Zhang W, Walker WA, Xavier RX, Cherayil BJ, Shi HN
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Heligmosomoides polygyrus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness Increase
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Missing
Journal
Mucosal Immunology
Project Number
Unavailable
DOI
21 2018_2
Details
DOI -
Open Access 		Schistosoma mansoni infection is associated with quantitative and qualitative modifcations of the mammalian intestinal microbiota Mouse (Mus musculus) Schistosoma mansoni
Authors
Jenkins TP, Peachey LE, Ajami NJ, MacDonald AS, Hsieh MH, Brindley PJ, Cantacessi C, Rinaldi G
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Schistosoma mansoni
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Decrease
Richness Decrease
Beta diversity
Evenness Increase
Sample Site
Large intestine,Small intestine
Sample Type
Lumen
Sequence Data Repository
Mendeley
Journal
Scientific Reports
Project Number
10.17632/y8c7vpc8zp.1
DOI
22 2018_13
Details
DOI -
Open Access 		Manipulation of host and parasite microbiotas: survival strategies during chronic nematode infection Mouse (Mus musculus) Trichuris muris
Authors
White EC, Houlden A, Bancroft AJ, Hayes KS, Goldrick M, Grencis RK, Roberts IS
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Trichuris muris
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness Increase
Sample Site
Caecum
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
Science Advances
Project Number
PRJEB12611
DOI
23 2018_12
Details
DOI - 		The benign helminth Hymenolepis diminuta ameliorates chemically induced colitis in a rat model system Rat (Rattus norvegicus) Hymenolepis diminuta
Authors
Pomajbíková KJ, Jirků M, Levá J, Sobotková K, Morien E, Parfrey LW
Host Species
Rat (Rattus norvegicus)
Control Species
Rat (Rattus norvegicus)
Infection Type
Experimental
Parasite Species
Hymenolepis diminuta
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
Parasitology
Project Number
PRJEB25354
DOI
24 2018_10
Details
DOI -
Open Access 		Mucosal barrier and Th2 immune responses are enhanced by dietary inulin in pigs infected with Trichuris suis Pig (Sus scrofa domestica) Trichuris suis
Authors
Myhill LJ, Stolzenbach S, Hansen TVA, Skovgaard K, Stensvold CR, O'Brien Andersen L, Nejsum P, Mejer H, Thamsborg SM, Williams AR
Host Species
Pig (Sus scrofa domestica)
Control Species
Pig (Sus scrofa domestica)
Infection Type
Experimental
Parasite Species
Trichuris suis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
Colon
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
Frontiers in Immunology
Project Number
PRJEB29079
DOI

2017
25 2017_3
Details
DOI - 		Microbial community and ovine host response varies with early and late stages of Haemonchus contortus infection Sheep (Ovis aries) Haemonchus contortus
Authors
El-Ashram S, Al Nasr I, Abouhaje F, El-Kemary M, Huang G, Dinçel G, Mehmood R, Hu M, Suo X
Host Species
Sheep (Ovis aries)
Control Species
Sheep (Ovis aries)
Infection Type
Experimental
Parasite Species
Haemonchus contortus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness Increase
Sample Site
Abomasum,Rumen
Sample Type
Fluids
Sequence Data Repository
Missing
Journal
Veterinary Research Communications
Project Number
Unavailable
DOI
26 2017_2
Details
DOI -
Open Access 		A benign helminth alters the host immune system and the gut microbiota in a rat model system Rat (Rattus norvegicus) Hymenolepis diminuta
Authors
Wegener Parfrey L, Jirků M, Å íma R, Jalovecká M, Sak B, Grigore K, Jirků Pomajbíkova K
Host Species
Rat (Rattus norvegicus)
Control Species
Rat (Rattus norvegicus)
Infection Type
Experimental
Parasite Species
Hymenolepis diminuta
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS One
Project Number
ERP014631
DOI

2016
27 2016_5
Details
DOI - 		Got worms? Perinatal exposure to helminths prevents persistent immune sensitization and cognitive dysfunction induced by early-life infection Rat (Rattus norvegicus) Hymenolepis diminuta
Authors
Williamson LL, McKenney EA, Holzknecht ZE, Belliveau C, Rawls JF, Poulton S, Parker W, Bilbo SD
Host Species
Rat (Rattus norvegicus)
Control Species
Rat (Rattus norvegicus)
Infection Type
Experimental
Parasite Species
Hymenolepis diminuta
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Not assessed
Richness Not assessed
Beta diversity
Evenness Not assessed
Sample Site
Caecum
Sample Type
None
Sequence Data Repository
Missing
Journal
Brain, Behavior, and Immunity
Project Number
Unavailable
DOI
28 2016_3
Details
DOI -
Open Access 		The effect of helminth infection on the microbial composition and structure of the caprine abomasal microbiome Alpine Goat (Capra aegagrus hircus) Haemonchus contortus
Authors
Li RW, Li W, Sun J, Yu P, Baldwin RL, Urban JF Jr
Host Species
Alpine Goat (Capra aegagrus hircus)
Control Species
Alpine Goat (Capra aegagrus hircus)
Infection Type
Experimental
Parasite Species
Haemonchus contortus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
Abomasum
Sample Type
Lumen
Sequence Data Repository
MG-RAST
Journal
Scientific Reports
Project Number
mgp13390; mgm4629311.3 to mgm4629350.3
DOI
29 2016_2
Details
DOI -
Open Access 		Impact of helminth infections and nutritional constraints on the small intestine microbiota Rabbits (Oryctolagus cuniculus) Trichostrongylus retortaeformis
Authors
Cattadori IM, Sebastian A, Hao H, Katani R, Albert I, Eilertson KE, Kapur V, Pathak A, Mitchell S
Host Species
Rabbits (Oryctolagus cuniculus)
Control Species
Rabbits (Oryctolagus cuniculus)
Infection Type
Experimental
Parasite Species
Trichostrongylus retortaeformis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Decrease
Richness Decrease
Beta diversity
Evenness None - no change
Sample Site
Duodenum
Sample Type
Mucosa
Sequence Data Repository
Missing
Journal
PLoS One
Project Number
Unavailable
DOI
30 2016_1
Details
DOI -
Open Access 		Changes in duodenal tissue-associated microbiota following hookworm infection and consecutive gluten challenges in humans with coeliac disease Human (Homo Sapiens) Necator americanus
Authors
Giacomin P, Zakrzewski M, Jenkins TP, Su X, Al-Hallaf R, Croese J, de Vries S, Grant A, Mitreva M, Loukas A, Krause L, Cantacessi C
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Experimental
Parasite Species
Necator americanus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness None - no change
Sample Site
Duodenum
Sample Type
Biopsy
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Scientific Reports
Project Number
SRP078558
DOI

2015
31 2015_6
Details
DOI -
Open Access 		Alteration of the rat cecal microbiome during colonization with the helminth Hymenolepis diminuta Rat (Rattus norvegicus) Hymenolepis diminuta
Authors
McKenney EA, Williamson L, Yoder AD, Rawls JF, Bilbo SD, Parker W
Host Species
Rat (Rattus norvegicus)
Control Species
Rat (Rattus norvegicus)
Infection Type
Experimental
Parasite Species
Hymenolepis diminuta
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
Caecum
Sample Type
Lumen
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Gut Microbes
Project Number
PRJNA270622
DOI
32 2015_4
Details
DOI -
Open Access 		Type 2 immunity-dependent reduction of segmented filamentous bacteria in mice infected with the helminthic parasite Nippostrongylus brasiliensis Mouse (Mus musculus) Nippostrongylus brasiliensis
Authors
Fricke WF, Song Y, Wang AJ, Smith A, Grinchuk V, Pei C, Ma B, Lu N, Urban JF Jr, Shea-Donohue T, Zhao A
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Nippostrongylus brasiliensis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
Small intestine
Sample Type
Faeces,Lumen
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Microbiome
Project Number
PRJNA255974
DOI
33 2015_3
Details
DOI -
Open Access 		Chronic Trichuris muris infection in C57BL/6 mice causes significant changes in host microbiota and metabolome: effects reversed by pathogen clearance Mouse (Mus musculus) Trichuris muris
Authors
Houlden A, Hayes KS, Bancroft AJ, Worthington JJ, Wang P, Grencis RK, Roberts IS
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Trichuris muris
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Decrease
Richness Decrease
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS One
Project Number
ERP008663
DOI
34 2015_2
Details
DOI -
Open Access 		Chronic Trichuris muris infection decreases diversity of the intestinal microbiota and concomitantly increases the abundance of Lactobacilli Mouse (Mus musculus) Trichuris muris
Authors
Holm JB, Sorobetea D, Kiilerich P, Ramayo-Caldas Y, Estellé J, Ma T, Madsen L, Kristiansen K, Svensson-Frej M
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Trichuris muris
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness Increase
Sample Site
Caecum
Sample Type
Faeces,Lumen
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS One
Project Number
ERP006108
DOI
35 2015_1
Details
DOI -
Open Access 		Experimental hookworm infection and escalating gluten challenges are associated with increased microbial richness in celiac subjects Human (Homo Sapiens) Necator americanus
Authors
Giacomin P, Zakrzewski M, Croese J, Su X, Sotillo J, McCann L, Navarro S, Mitreva M, Krause L, Loukas A, Cantacessi C
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Experimental
Parasite Species
Necator americanus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Scientific Reports
Project Number
SRP059769
DOI

2014
36 2014_3
Details
DOI -
Open Access 		Commensal–pathogen interactions in the intestinal tract: Lactobacilli promote infection with, and are promoted by, helminth parasites Mouse (Mus musculus) Heligmosomoides polygyrus
Authors
Reynolds LA, Smith KA, Filbey KJ, Harcus Y, Hewitson JP, Redpath SA, Valdez Y, Yebra MJ, Finlay BB, Maizels RM
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Heligmosomoides polygyrus
Profiling Method
Cloning and bacterial 16S rRNA amplicon qPCR
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
Duodenum
Sample Type
Faeces,Lumen
Sequence Data Repository
Missing
Journal
Gut Microbes
Project Number
N/A (clone library)
DOI
37 2014_2
Details
DOI -
Open Access 		Impact of experimental hookworm infection on the human gut microbiota Human (Homo Sapiens) Necator americanus
Authors
Cantacessi C, Giacomin P, Croese J, Zakrzewski M, Sotillo J, McCann L, Nolan MJ, Mitreva M, Krause L, Loukas A
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Experimental
Parasite Species
Necator americanus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
The Journal of Infectious Diseases
Project Number
SRP041283
DOI

2013
38 2013_3
Details
DOI -
Open Access 		Infection with the carcinogenic liver fluke Opisthorchis viverrini modifies intestinal and biliary microbiome Hamster (Mesocricetus auratus) Opisthorchis viverrini
Authors
Plieskatt JL, Deenonpoe R, Mulvenna JP, Krause L, Sripa B, Bethony JM, Brindley PJ
Host Species
Hamster (Mesocricetus auratus)
Control Species
Hamster (Mesocricetus auratus)
Infection Type
Experimental
Parasite Species
Opisthorchis viverrini
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness None - no change
Sample Site
Bile ducts,Colorectum
Sample Type
Lumen
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
The FASEB Journal
Project Number
PRJNA188112
DOI
39 2013_2
Details
DOI -
Open Access 		Small intestinal nematode infection of mice is associated with increased enterobacterial loads alongside the intestinal tract Mouse (Mus musculus) Heligmosomoides polygyrus
Authors
Rausch S, Held J, Fischer A, Heimesaat MM, Kühl AA, Bereswill S, Hartmann S
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Heligmosomoides polygyrus
Profiling Method
Bacterial 16S rRNA qPCR
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
Caecum,Colon,Ileum
Sample Type
Lumen
Sequence Data Repository
Missing
Journal
PLoS One
Project Number
N/A
DOI

2012
40 2012_3
Details
DOI -
Open Access 		Alterations in the porcine colon microbiota induced by the gastrointestinal nematode Trichuris suis Pig (Sus scrofa domestica) Trichuris suis
Authors
Li RW, Wu S, Li W, Navarro K, Couch RD, Hill D, Urban JF Jr.
Host Species
Pig (Sus scrofa domestica)
Control Species
Pig (Sus scrofa domestica)
Infection Type
Experimental
Parasite Species
Trichuris suis
Profiling Method
Cloning and bacterial 16S rRNA amplicon qPCR
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
Colon
Sample Type
Lumen
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Infection and Immunity (WAS: American Society for Microbiology Journals)
Project Number
PRJNA518074
DOI
41 2012_2
Details
DOI -
Open Access 		Worm burden-dependent disruption of the porcine colon microbiota by Trichuris suis infection Pig (Sus scrofa domestica) Trichuris suis
Authors
Wu S, Li RW, Li W, Beshah E, Dawson HD, Urban JF Jr
Host Species
Pig (Sus scrofa domestica)
Control Species
Pig (Sus scrofa domestica)
Infection Type
Experimental
Parasite Species
Trichuris suis
Profiling Method
Whole metagenome shotgun sequencing (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
Colon
Sample Type
Lumen
Sequence Data Repository
MG-RAST
Journal
PLoS One
Project Number
4474250.3 to 4474257.3, 4474259.3, 4474261.3 and 4474262.3
DOI
42 2012_1
Details
DOI -
Open Access 		Therapeutic helminth infection of macaques with idiopathic chronic diarrhea alters the inflammatory signature and mucosal microbiota of the colon Macaca mulatta - captive Trichuris trichiura
Authors
Broadhurst MJ, Ardeshir A, Kanwar B, Mirpuri J, Gundra UM, Leung JM, Wiens KE, Vujkovic-Cvijin I, Kim CC, Yarovinsky F, Lerche NW, McCune JM, Loke P
Host Species
Macaca mulatta - captive
Control Species
Macaca mulatta - captive
Infection Type
Experimental
Parasite Species
Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness None - no change
Sample Site
Colon
Sample Type
Biopsy,Blood
Sequence Data Repository
Missing
Journal
PLoS Pathogens
Project Number
N/A
DOI

2011
43 2011_1
Details
DOI -
Open Access 		Metagenome plasticity of the bovine abomasal microbiota in immune animals in response to Ostertagia ostertagi Infection Cattle (Bos taurus) Ostertagia ostertagi
Authors
Li RW, Wu S, Li W, Huang Y, Gasbarre LC
Host Species
Cattle (Bos taurus)
Control Species
Cattle (Bos taurus)
Infection Type
Experimental
Parasite Species
Ostertagia ostertagi
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
Abomasum
Sample Type
Lumen
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
PLoS One
Project Number
PRJNA518072
DOI

2010
44 2010_1
Details
DOI - 		Alteration of the murine gut microbiota during infection with the parasitic helminth Heligmosomoides polygyrus Mouse (Mus musculus) Heligmosomoides polygyrus
Authors
Walk ST, Blum AM, Ang-Sheng S, Weinstock JV, Young VB
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Heligmosomoides polygyrus
Profiling Method
Cloning and bacterial 16S rRNA amplicon qPCR
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
Caecum,Ileum
Sample Type
Mucosa
Sequence Data Repository
Missing
Journal
Inflammatory Bowel Diseases
Project Number
N/A (qPCR)
DOI