Data: SearchPLoS One

Found Studies

	Mdb ID	Title	Host Species	Parasite Species
2017
1	2017_2 Details DOI - Open Access	A benign helminth alters the host immune system and the gut microbiota in a rat model system	None	None
	Authors Wegener Parfrey L, Jirků M, Šíma R, Jalovecká M, Sak B, Grigore K, Jirků Pomajbíkova K Host Species None Control Species Rat (Rattus norvegicus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal PLoS One Project Number ERP014631 DOI https://doi.org/10.1371/journal.pone.0182205
2	2017_1 Details DOI - Open Access	Infections by human gastrointestinal helminths are associated with changes in faecal microbiota diversity and composition	None	None
	Authors Jenkins TP, Rathnayaka Y, Perera PK, Peachey LE, Nolan MJ, Krause L, Rajakaruna RS, Cantacessi C Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal PLoS One Project Number PRJEB21999 DOI https://doi.org/10.1371/journal.pone.0184719
2016
3	2016_2 Details DOI - Open Access	Impact of helminth infections and nutritional constraints on the small intestine microbiota	None	None
	Authors Cattadori IM, Sebastian A, Hao H, Katani R, Albert I, Eilertson KE, Kapur V, Pathak A, Mitchell S Host Species None Control Species Rabbits (Oryctolagus cuniculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness Decrease Richness Decrease Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal PLoS One Project Number Unavailable DOI https://doi.org/10.1371/journal.pone.0159770
2015
4	2015_3 Details DOI - Open Access	Chronic Trichuris muris infection in C57BL/6 mice causes significant changes in host microbiota and metabolome: effects reversed by pathogen clearance	None	None
	Authors Houlden A, Hayes KS, Bancroft AJ, Worthington JJ, Wang P, Grencis RK, Roberts IS Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness Decrease Richness Decrease Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal PLoS One Project Number ERP008663 DOI https://doi.org/10.1371/journal.pone.0125945
5	2015_2 Details DOI - Open Access	Chronic Trichuris muris infection decreases diversity of the intestinal microbiota and concomitantly increases the abundance of Lactobacilli	None	None
	Authors Holm JB, Sorobetea D, Kiilerich P, Ramayo-Caldas Y, Estellé J, Ma T, Madsen L, Kristiansen K, Svensson-Frej M Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal PLoS One Project Number ERP006108 DOI https://doi.org/10.1371/journal.pone.0125495
2013
6	2013_2 Details DOI - Open Access	Small intestinal nematode infection of mice is associated with increased enterobacterial loads alongside the intestinal tract	None	None
	Authors Rausch S, Held J, Fischer A, Heimesaat MM, Kühl AA, Bereswill S, Hartmann S Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method Bacterial 16S rRNA qPCR Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal PLoS One Project Number N/A DOI https://doi.org/10.1371/journal.pone.0074026
7	2013_1 Details DOI - Open Access	Patent human infections with the whipworm, Trichuris trichiura, are not associated with alterations in the faecal microbiota	None	None
	Authors Cooper P, Walker AW, Reyes J, Chico M, Salter SJ, Vaca M, Parkhill J Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness Decrease Richness Decrease Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal PLoS One Project Number ERP002465 DOI https://doi.org/10.1371/journal.pone.0076573
2012
8	2012_2 Details DOI - Open Access	Worm burden-dependent disruption of the porcine colon microbiota by Trichuris suis infection	None	None
	Authors Wu S, Li RW, Li W, Beshah E, Dawson HD, Urban JF Jr Host Species None Control Species Pig (Sus scrofa domestica) Infection Type Experimental Parasite Species None Profiling Method Whole metagenome shotgun sequencing (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository MG-RAST Journal PLoS One Project Number 4474250.3 to 4474257.3, 4474259.3, 4474261.3 and 4474262.3 DOI https://doi.org/10.1371/journal.pone.0035470
2011
9	2011_1 Details DOI - Open Access	Metagenome plasticity of the bovine abomasal microbiota in immune animals in response to Ostertagia ostertagi Infection	None	None
	Authors Li RW, Wu S, Li W, Huang Y, Gasbarre LC Host Species None Control Species Cattle (Bos taurus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal PLoS One Project Number PRJNA518072 DOI https://doi.org/10.1371/journal.pone.0024417

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