| Studies |
68 |
| -- N/A -- |
1 |
| Actinobacteria |
1 |
| Alphaproteobacteria |
1 |
| Bacilli |
3 |
| Bacteroidia |
1 |
| Betaproteobacteria |
1 |
| Clostridia |
4 |
| Coreobacteriia |
1 |
| Deltaproteobacteria |
1 |
| Endomicrobia |
1 |
| Erysipelotrichi |
1 |
| Erysipelotrichia |
2 |
| Flavobacteria |
1 |
| Fusobacteriia |
2 |
| Gammaproteobacteria |
2 |
| Melainabacteria |
1 |
| Methanomicrobia |
1 |
| Mollicutes |
3 |
| Negativicutes |
1 |
| Opitutae |
1 |
| Tenericutes |
1 |
| Verrucomicrobiae |
3 |
| --Total: Class -- |
34 |
| --Total Domain -- |
0 |
| -- N/A -- |
1 |
| Anaeroplasmataceae |
1 |
| Bacteroidaceae |
7 |
| Bifidobacteriaceae |
2 |
| Campylobacteraceae |
1 |
| Cerasiococcaceae |
1 |
| Clostridiaceae |
5 |
| Coriobacteriaceae |
1 |
| Coriobacteriaceae |
2 |
| Desulfobacteraceae |
1 |
| Desulfovibrionaceae |
1 |
| Elusimicrobiaceae |
1 |
| Enterobacteriaceae |
5 |
| Enterococcaceae |
4 |
| Erysipelotrichaceae |
7 |
| Eubacteriaceae |
1 |
| Fusobacteriaceae |
1 |
| Lachnospiraceae |
6 |
| Lactobacillaceae |
10 |
| Leptospiraceae |
1 |
| Leuconostocaceae |
2 |
| Methanocorpusculaceae |
1 |
| Moraxellaceae |
1 |
| Odoribacteraceae |
1 |
| Paraprevotellaceae |
1 |
| Pasteurellaceae |
1 |
| Peptococcaceae |
4 |
| Peptostreptococcaceae |
2 |
| Phyromonadaceae |
1 |
| Porphyromonadaceae |
4 |
| Prevotellaceae |
6 |
| Pseudomonadaceae |
1 |
| Rikenellaceae |
2 |
| Ruminococcaceae |
7 |
| S24-7 |
4 |
| Sutterellaceae |
1 |
| Turicibacteraceae |
2 |
| Veillonellaceae |
1 |
| Verrucomicrobiaceae |
3 |
| Weeksellacea |
1 |
| Lachnospiracaea |
1 |
| Mogibacteriaceae |
1 |
| Dehalobacteriaceae |
1 |
| Streptococcaceae |
1 |
| --Total Family -- |
109 |
| Acetanaerobacterium |
1 |
| Acetivibrio |
1 |
| Acinetobacter |
2 |
| Actinobacillus |
1 |
| Adlercreutzia |
1 |
| Agrobacterium |
1 |
| Akkermansia |
4 |
| Allobaculum |
3 |
| Alloprevotella |
1 |
| Asteroleplasma |
1 |
| Bacillus |
3 |
| Bacteroides |
11 |
| Barnsiella |
1 |
| BF311 |
1 |
| Bifidobacterium |
4 |
| Blautia |
3 |
| Brachyspira |
1 |
| Bulleidia |
1 |
| Butyricicoccus |
1 |
| Campylobacter |
3 |
| Candidatus Arthromitus |
1 |
| Catenibacterium |
1 |
| CF231 |
1 |
| Chelatococcus |
1 |
| Christensenella |
1 |
| Cloacibacillus |
1 |
| Clostridium |
6 |
| ClostridiumIII |
1 |
| ClsotridiumXIVa |
1 |
| Collinsella |
2 |
| Coprobacillus |
1 |
| Coriobacteriaceae |
1 |
| Dehalobacterium |
1 |
| Desulfocella |
1 |
| Desulfovibrio |
3 |
| Dialister |
2 |
| Dorea |
6 |
| Enhydrobacter |
1 |
| Enterobacter |
1 |
| Enterococcus |
4 |
| Enterorhabdus |
1 |
| Epulopiscium |
1 |
| Escherichia |
3 |
| Ethanoligenens |
1 |
| Eubacterium |
2 |
| Fibrobacter |
1 |
| Francisella |
1 |
| Fructobacillus |
1 |
| Fusobacterium |
1 |
| Geobacillus |
1 |
| Haemophilus |
1 |
| Halomonas |
1 |
| Howardella |
1 |
| Jeotgalicoccus |
1 |
| Klebsiella |
2 |
| Lactobacillus |
9 |
| Lactococcus |
2 |
| Leptomena |
1 |
| Leucobacter |
1 |
| Megamonas |
1 |
| Megasphaera |
2 |
| Meiothermus |
1 |
| Methanocorpusculum |
1 |
| Methylobacterium |
1 |
| Microbacterium |
1 |
| MollicutesRF9 |
1 |
| Mucispirillum |
2 |
| Mucospirillium |
1 |
| Mycoplasma |
1 |
| Nevskia |
1 |
| Olsenella |
4 |
| Oribacterium |
1 |
| Oscillibacter |
2 |
| Oscillospira |
1 |
| Paludibacter |
1 |
| Papilibacter |
1 |
| Parabacteroides |
4 |
| Paraprevotella |
2 |
| Parasutterella |
1 |
| Peptococcus |
4 |
| Prevotella |
7 |
| Proteiniphilum |
1 |
| Pseudobutyrivibrio |
1 |
| Pseudomonas |
3 |
| RFN20 |
1 |
| Rhodococcus |
2 |
| Rosburia |
1 |
| Roseburia |
1 |
| Ruminococcus |
7 |
| Schlegelella |
1 |
| Schwartzia |
1 |
| Selenomonas |
1 |
| Silanimonas |
1 |
| Sphingomonas |
2 |
| Spirochaeta |
2 |
| Sporobacter |
1 |
| Staphylococcus |
1 |
| Streptococcus |
1 |
| Subdoligranulum |
3 |
| Succiniclasticum |
1 |
| Succinivibrio |
2 |
| Sutterella |
1 |
| Thermomonas |
1 |
| Thermotoga |
1 |
| Treponema |
1 |
| Turicibacter |
4 |
| Variovorax |
1 |
| Veillonella |
1 |
| Alistipes |
1 |
| --Total Genus -- |
200 |
| -- Total Kingdom -- |
0 |
| -- N/A -- |
1 |
| Anaeroplasmatales |
1 |
| Bacteroidales |
5 |
| Bifidobacteriales |
1 |
| Cerasiococcales |
1 |
| Clostridiales |
4 |
| Coriobacteriales |
3 |
| Desulfovibrionales |
1 |
| Elusimicrobiales |
1 |
| Enterobacterales |
1 |
| Erysipelotrichales |
1 |
| Flavobacteriales |
1 |
| Fusobacteriales |
2 |
| Gastranaerophilales |
1 |
| GMD14H09 |
1 |
| Lactobacillales |
4 |
| Methanomicrobiales |
1 |
| Pasteurellales |
2 |
| Pseudomonadales |
2 |
| RF32 |
1 |
| RF9 |
1 |
| Rickettsiales |
1 |
| Selenomonadales |
1 |
| Turicibacterales |
3 |
| Verrucomicrobiales |
3 |
| --Total Order -- |
44 |
| -- N/A -- |
1 |
| Actinobacteria |
3 |
| Bacteroides |
7 |
| Bacteroidetes |
8 |
| Cyanobacteria |
2 |
| Deferribacteres |
2 |
| Elusimicrobia |
1 |
| Euryarchaeota |
2 |
| Fibrobacteres |
1 |
| Firmicutes |
13 |
| Fusobacteria |
1 |
| Gammatimonadetes |
1 |
| Proteobacteria |
6 |
| Spirochaetes |
3 |
| Tenericutes |
4 |
| Verrucomicrobia |
3 |
| Candidatus Saccharibacteria |
1 |
| -- Total Pyhlum -- |
59 |
| -- N/A -- |
1 |
| Akkermansia muciniphila |
3 |
| Bacteroides acidifaciens |
3 |
| Candidatus arthromitus SFB |
3 |
| Clostridium cochleatum |
1 |
| Enterobacter arachidis |
1 |
| Lactobacillus intestinalis |
1 |
| Lactobacillus reuteri |
3 |
| Ruminococcus gnavus |
1 |
| Selenomonas ruminantium |
1 |
| --Total Species -- |
18 |
| UNKNOWN |
22 |
| Mouse (Mus musculus) |
12 |
| Cattle (Bos taurus) |
1 |
| Macaca mulatta - captive |
1 |
| Pig (Sus scrofa domestica) |
3 |
| Human (Homo Sapiens) |
14 |
| Hamster (Mesocricetus auratus) |
1 |
| Wild yellow-necked mouse (Apodemus flavicollis) |
1 |
| Rat (Rattus norvegicus) |
4 |
| Cat (Felis catus) |
3 |
| Rabbits (Oryctolagus cuniculus) |
1 |
| Alpine Goat (Capra aegagrus hircus) |
1 |
| Horse (Equus ferus caballus) |
2 |
| Sheep (Ovis aries) |
1 |
| Dog (Canis lupus familiaris) |
2 |
| Three-spined stickleback (Gasterosteus aculeatus) |
1 |
| Chimpanzees (Pan troglodytes verus)
|
1 |
| --Total: Hosts -- |
71 |
| None |
3 |
| Caecum |
8 |
| Rumen |
1 |
| Large intestine |
2 |
| Abomasum |
3 |
| Duodenum |
3 |
| Small intestine |
2 |
| Colon |
6 |
| Stomach |
1 |
| Bile ducts |
1 |
| Colorectum |
1 |
| Ileum |
3 |
| --Total Sample Site -- |
34 |
| None |
1 |
| Faeces |
25 |
| Fluids |
1 |
| Lumen |
13 |
| Mucosa |
3 |
| Biopsy |
2 |
| Blood |
1 |
| --Total Sample Type -- |
46 |
| TODO |
3 |
| Heligmosomoides polygyrus |
5 |
| Ostertagia ostertagi |
1 |
| Trichuris trichiura |
5 |
| Trichuris suis |
3 |
| Opisthorchis viverrini |
1 |
| Trichuris spp. |
1 |
| Necator americanus |
6 |
| Trichuris muris |
3 |
| Nippostrongylus brasiliensis |
1 |
| Syphacia spp. |
1 |
| Hymenolepis diminuta |
5 |
| Trichostrongylus retortaeformis |
1 |
| Haemonchus contortus |
2 |
| Toxocara cati |
1 |
| Ancylostoma duodenale |
2 |
| Ascaris lumbricoides |
4 |
| Schistosoma mansoni |
3 |
| Strongyloides stercoralis |
2 |
| Cyathostominae |
1 |
| Strongyles |
1 |
| Metagonimus yokogawai |
1 |
| Clonorchis sinensis |
2 |
| Schistosoma haematobium |
1 |
| Enterobius vermicularis |
1 |
| Giardia intestinalis |
3 |
| Entamoeba hartmanni |
1 |
| Ascaris spp. |
1 |
| Hookworms |
1 |
| Ancylostoma caninum |
2 |
| Cryptosporidium |
1 |
| Teladorsagia circumcincta |
1 |
| glutathione S-transferase (P28GST) from Schistosoma
|
1 |
| Anoplocephala perfoliata |
1 |
| ES-62 |
1 |
| glycoprotein from Acanthocheilonema viteae |
1 |
| Schistocephalus solidus
|
1 |
| --Total Parasite Species -- |
72 |
| High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) |
14 |
| High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) |
47 |
| Whole metagenome shotgun sequencing (Illumina) |
2 |
| Cloning and bacterial 16S rRNA amplicon qPCR |
4 |
| Bacterial 16S rRNA qPCR |
1 |
| High throughput sequencing of 16S rRNA amplicons (Ion Torrent) |
1 |
| -- Total Proflinig Method -- |
69 |
| TODO |
13 |
| Infection and Immunity (WAS: American Society for Microbiology Journals) |
2 |
| Microbiome |
2 |
| Parasites & Vectors |
2 |
| Brain, Behavior, and Immunity |
1 |
| Experimental Parasitology |
1 |
| Frontiers in Immunology |
2 |
| Frontiers in Microbiology |
1 |
| Frontiers in Physiology |
1 |
| Gut Microbes |
3 |
| Inflammatory Bowel Diseases |
1 |
| International Journal for Parasitology |
5 |
| Mucosal Immunology |
1 |
| Parasitology Research |
1 |
| Parasitology |
1 |
| PeerJ — the Journal of Life and Environmental Sciences |
1 |
| Philosophical Transactions of the Royal Society London B: Biolological Sciences |
1 |
| PLoS Neglected Tropical Diseases |
3 |
| PLoS Pathogens |
3 |
| PLoS One |
9 |
| Science Advances |
1 |
| Scientific Reports |
9 |
| The FASEB Journal |
1 |
| The Journal of Infectious Diseases |
1 |
| Veterinary Research Communications |
1 |
| The ISME Journal |
1 |
| The American Journal of Tropical Medicine and Hygiene |
1 |
| --Total Journal -- |
69 |
