Your Query: High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Mdb ID | Title | Host Species | Parasite Species | ||||
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2019 |
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1 |
2019_6 Details DOI - |
Schistosoma mansoni worm infection regulates the intestinal microbiota and susceptibility to colitis | None | None | |||
Authors
Achilleas Floudasa, Gabriella Avielloa, Christian Schwartza, Ian B. Jefferyb, Paul W. O'Tooleb and Padraic G. Fallon
Host Species
None
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Not assessed
Richness Not assessed Beta diversity
Evenness Not assessed
Sample Site
None
Sample Type
None
Sequence Data Repository
Missing
Journal
TODO
Project Number
New project number
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2018 |
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2 |
2018_5 Details DOI - Open Access |
Dynamic changes in human-gut microbiome in relation to a placebo-controlled anthelminthic trial in Indonesia | None | None | |||
Authors
Martin I, Djuardi Y, Sartono E, Rosa BA, Supali T, Mitreva M, Houwing-Duistermaat JJ, Yazdanbakhsh M
Host Species
None
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
Nematode.net
Journal
PLoS Neglected Tropical Diseases
Project Number
nematode.net/ Indonesia_Microbiome.htm
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3 |
2018_4 Details DOI - Open Access |
Helminth-induced alterations of the gut microbiota exacerbate bacterial colitis | None | None | |||
Authors
Su C, Su L, Li Y, Long SR, Chang J, Zhang W, Walker WA, Xavier RX, Cherayil BJ, Shi HN
Host Species
None
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness Increase Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
Missing
Journal
Mucosal Immunology
Project Number
Unavailable
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4 |
2018_13 Details DOI - Open Access |
Manipulation of host and parasite microbiotas: survival strategies during chronic nematode infection | None | None | |||
Authors
White EC, Houlden A, Bancroft AJ, Hayes KS, Goldrick M, Grencis RK, Roberts IS
Host Species
None
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness Increase
Sample Site
None
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
Science Advances
Project Number
PRJEB12611
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2016 |
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5 |
2016_2 Details DOI - Open Access |
Impact of helminth infections and nutritional constraints on the small intestine microbiota | None | None | |||
Authors
Cattadori IM, Sebastian A, Hao H, Katani R, Albert I, Eilertson KE, Kapur V, Pathak A, Mitchell S
Host Species
None
Control Species
Rabbits (Oryctolagus cuniculus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Decrease
Richness Decrease Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
Missing
Journal
PLoS One
Project Number
Unavailable
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2015 |
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6 |
2015_8 Details DOI - |
(CAT) Differences in the faecal microbiome of non-diarrhoeic clinically healthy dogs and cats associated with Giardia duodenalis infection: impact of hookworms and coccidia | None | None | |||
Authors
Šlapeta J, Dowd SE, Alanazi AD, Westman ME, Brown GK
Host Species
None
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
International Journal for Parasitology
Project Number
PRJNA276586
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7 |
2015_7 Details DOI - |
(DOG) - Differences in the faecal microbiome of non-diarrhoeic clinically healthy dogs and cats associated with Giardia duodenalis infection: impact of hookworms and coccidia | None | None | |||
Authors
Šlapeta J, Dowd SE, Alanazi AD, Westman ME, Brown GK
Host Species
None
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
International Journal for Parasitology
Project Number
PRJNA276586
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8 |
2015_5 Details DOI - |
Interactions between multiple helminths and the gut microbiota in wild rodents | None | None | |||
Authors
Kreisinger J, Bastien G, Hauffe HC, Marchesi J, Perkins SE
Host Species
None
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness Increase
Sample Site
None
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
Philosophical Transactions of the Royal Society London B: Biolological Sciences
Project Number
ERP009377
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9 |
2015_3 Details DOI - Open Access |
Chronic Trichuris muris infection in C57BL/6 mice causes significant changes in host microbiota and metabolome: effects reversed by pathogen clearance | None | None | |||
Authors
Houlden A, Hayes KS, Bancroft AJ, Worthington JJ, Wang P, Grencis RK, Roberts IS
Host Species
None
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Decrease
Richness Decrease Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS One
Project Number
ERP008663
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10 |
2015_1 Details DOI - Open Access |
Experimental hookworm infection and escalating gluten challenges are associated with increased microbial richness in celiac subjects | None | None | |||
Authors
Giacomin P, Zakrzewski M, Croese J, Su X, Sotillo J, McCann L, Navarro S, Mitreva M, Krause L, Loukas A, Cantacessi C
Host Species
None
Control Species
Human (Homo Sapiens)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Increase
Richness Increase Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Scientific Reports
Project Number
SRP059769
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2014 |
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11 |
2014_2 Details DOI - Open Access |
Impact of experimental hookworm infection on the human gut microbiota | None | None | |||
Authors
Cantacessi C, Giacomin P, Croese J, Zakrzewski M, Sotillo J, McCann L, Nolan MJ, Mitreva M, Krause L, Loukas A
Host Species
None
Control Species
Human (Homo Sapiens)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
The Journal of Infectious Diseases
Project Number
SRP041283
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2013 |
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12 |
2013_3 Details DOI - Open Access |
Infection with the carcinogenic liver fluke Opisthorchis viverrini modifies intestinal and biliary microbiome | None | None | |||
Authors
Plieskatt JL, Deenonpoe R, Mulvenna JP, Krause L, Sripa B, Bethony JM, Brindley PJ
Host Species
None
Control Species
Hamster (Mesocricetus auratus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Increase
Richness Increase Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
The FASEB Journal
Project Number
PRJNA188112
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13 |
2013_1 Details DOI - Open Access |
Patent human infections with the whipworm, Trichuris trichiura, are not associated with alterations in the faecal microbiota | None | None | |||
Authors
Cooper P, Walker AW, Reyes J, Chico M, Salter SJ, Vaca M, Parkhill J
Host Species
None
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Decrease
Richness Decrease Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS One
Project Number
ERP002465
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2011 |
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14 |
2011_1 Details DOI - Open Access |
Metagenome plasticity of the bovine abomasal microbiota in immune animals in response to Ostertagia ostertagi Infection | None | None | |||
Authors
Li RW, Wu S, Li W, Huang Y, Gasbarre LC
Host Species
None
Control Species
Cattle (Bos taurus)
Infection Type
Experimental
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
PLoS One
Project Number
PRJNA518072
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