Data: SearchHigh throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)

Found Studies

	Mdb ID	Title	Host Species	Parasite Species
2019
1	2019_6 Details DOI -	Schistosoma mansoni worm infection regulates the intestinal microbiota and susceptibility to colitis	None	None
	Authors Achilleas Floudasa, Gabriella Avielloa, Christian Schwartza, Ian B. Jefferyb, Paul W. O'Tooleb and Padraic G. Fallon Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness Not assessed Richness Not assessed Beta diversity Evenness Not assessed Sample Site None Sample Type None Sequence Data Repository Missing Journal TODO Project Number New project number DOI https://doi.org/10.1128/IAI.00275-19
2018
2	2018_5 Details DOI - Open Access	Dynamic changes in human-gut microbiome in relation to a placebo-controlled anthelminthic trial in Indonesia	None	None
	Authors Martin I, Djuardi Y, Sartono E, Rosa BA, Supali T, Mitreva M, Houwing-Duistermaat JJ, Yazdanbakhsh M Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Nematode.net Journal PLoS Neglected Tropical Diseases Project Number nematode.net/ Indonesia_Microbiome.htm DOI https://doi.org/10.1371/journal.pntd.0006620
3	2018_4 Details DOI - Open Access	Helminth-induced alterations of the gut microbiota exacerbate bacterial colitis	None	None
	Authors Su C, Su L, Li Y, Long SR, Chang J, Zhang W, Walker WA, Xavier RX, Cherayil BJ, Shi HN Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness None - no change Richness Increase Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal Mucosal Immunology Project Number Unavailable DOI https://doi.org/10.1038/mi.2017.20
4	2018_13 Details DOI - Open Access	Manipulation of host and parasite microbiotas: survival strategies during chronic nematode infection	None	None
	Authors White EC, Houlden A, Bancroft AJ, Hayes KS, Goldrick M, Grencis RK, Roberts IS Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal Science Advances Project Number PRJEB12611 DOI DOI: 10.1126/sciadv.aap7399
2016
5	2016_2 Details DOI - Open Access	Impact of helminth infections and nutritional constraints on the small intestine microbiota	None	None
	Authors Cattadori IM, Sebastian A, Hao H, Katani R, Albert I, Eilertson KE, Kapur V, Pathak A, Mitchell S Host Species None Control Species Rabbits (Oryctolagus cuniculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness Decrease Richness Decrease Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal PLoS One Project Number Unavailable DOI https://doi.org/10.1371/journal.pone.0159770
2015
6	2015_8 Details DOI -	(CAT) Differences in the faecal microbiome of non-diarrhoeic clinically healthy dogs and cats associated with Giardia duodenalis infection: impact of hookworms and coccidia	None	None
	Authors Šlapeta J, Dowd SE, Alanazi AD, Westman ME, Brown GK Host Species None Control Species UNKNOWN Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal International Journal for Parasitology Project Number PRJNA276586 DOI https://doi.org/10.1016/j.ijpara.2015.04.001
7	2015_7 Details DOI -	(DOG) - Differences in the faecal microbiome of non-diarrhoeic clinically healthy dogs and cats associated with Giardia duodenalis infection: impact of hookworms and coccidia	None	None
	Authors Šlapeta J, Dowd SE, Alanazi AD, Westman ME, Brown GK Host Species None Control Species UNKNOWN Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal International Journal for Parasitology Project Number PRJNA276586 DOI https://doi.org/10.1016/j.ijpara.2015.04.001
8	2015_5 Details DOI -	Interactions between multiple helminths and the gut microbiota in wild rodents	None	None
	Authors Kreisinger J, Bastien G, Hauffe HC, Marchesi J, Perkins SE Host Species None Control Species UNKNOWN Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal Philosophical Transactions of the Royal Society London B: Biolological Sciences Project Number ERP009377 DOI https://10.1098/rstb.2014.0295
9	2015_3 Details DOI - Open Access	Chronic Trichuris muris infection in C57BL/6 mice causes significant changes in host microbiota and metabolome: effects reversed by pathogen clearance	None	None
	Authors Houlden A, Hayes KS, Bancroft AJ, Worthington JJ, Wang P, Grencis RK, Roberts IS Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness Decrease Richness Decrease Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal PLoS One Project Number ERP008663 DOI https://doi.org/10.1371/journal.pone.0125945
10	2015_1 Details DOI - Open Access	Experimental hookworm infection and escalating gluten challenges are associated with increased microbial richness in celiac subjects	None	None
	Authors Giacomin P, Zakrzewski M, Croese J, Su X, Sotillo J, McCann L, Navarro S, Mitreva M, Krause L, Loukas A, Cantacessi C Host Species None Control Species Human (Homo Sapiens) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal Scientific Reports Project Number SRP059769 DOI https://doi.org/10.1038/srep13797
2014
11	2014_2 Details DOI - Open Access	Impact of experimental hookworm infection on the human gut microbiota	None	None
	Authors Cantacessi C, Giacomin P, Croese J, Zakrzewski M, Sotillo J, McCann L, Nolan MJ, Mitreva M, Krause L, Loukas A Host Species None Control Species Human (Homo Sapiens) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal The Journal of Infectious Diseases Project Number SRP041283 DOI https://doi.org/10.1093/infdis/jiu256
2013
12	2013_3 Details DOI - Open Access	Infection with the carcinogenic liver fluke Opisthorchis viverrini modifies intestinal and biliary microbiome	None	None
	Authors Plieskatt JL, Deenonpoe R, Mulvenna JP, Krause L, Sripa B, Bethony JM, Brindley PJ Host Species None Control Species Hamster (Mesocricetus auratus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal The FASEB Journal Project Number PRJNA188112 DOI https://doi.org/10.1096/fj.13-232751
13	2013_1 Details DOI - Open Access	Patent human infections with the whipworm, Trichuris trichiura, are not associated with alterations in the faecal microbiota	None	None
	Authors Cooper P, Walker AW, Reyes J, Chico M, Salter SJ, Vaca M, Parkhill J Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness Decrease Richness Decrease Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal PLoS One Project Number ERP002465 DOI https://doi.org/10.1371/journal.pone.0076573
2011
14	2011_1 Details DOI - Open Access	Metagenome plasticity of the bovine abomasal microbiota in immune animals in response to Ostertagia ostertagi Infection	None	None
	Authors Li RW, Wu S, Li W, Huang Y, Gasbarre LC Host Species None Control Species Cattle (Bos taurus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal PLoS One Project Number PRJNA518072 DOI https://doi.org/10.1371/journal.pone.0024417

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