Data: SearchLumen

Found Studies

	Mdb ID	Title	Host Species	Parasite Species
2018
1	2018_2 Details DOI - Open Access	Schistosoma mansoni infection is associated with quantitative and qualitative modifcations of the mammalian intestinal microbiota	None	None
	Authors Jenkins TP, Peachey LE, Ajami NJ, MacDonald AS, Hsieh MH, Brindley PJ, Cantacessi C, Rinaldi G Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Decrease Richness Decrease Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository Mendeley Journal Scientific Reports Project Number 10.17632/y8c7vpc8zp.1 DOI https://doi.org/10.1038/s41598-018-30412-x
2016
2	2016_3 Details DOI - Open Access	The effect of helminth infection on the microbial composition and structure of the caprine abomasal microbiome	None	None
	Authors Li RW, Li W, Sun J, Yu P, Baldwin RL, Urban JF Jr Host Species None Control Species Alpine Goat (Capra aegagrus hircus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository MG-RAST Journal Scientific Reports Project Number mgp13390; mgm4629311.3 to mgm4629350.3 DOI https://doi.org/10.1038/srep20606
2015
3	2015_6 Details DOI - Open Access	Alteration of the rat cecal microbiome during colonization with the helminth Hymenolepis diminuta	None	None
	Authors McKenney EA, Williamson L, Yoder AD, Rawls JF, Bilbo SD, Parker W Host Species None Control Species Rat (Rattus norvegicus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal Gut Microbes Project Number PRJNA270622 DOI https://doi.org/10.1080/19490976.2015.1047128
4	2015_5 Details DOI -	Interactions between multiple helminths and the gut microbiota in wild rodents	None	None
	Authors Kreisinger J, Bastien G, Hauffe HC, Marchesi J, Perkins SE Host Species None Control Species UNKNOWN Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal Philosophical Transactions of the Royal Society London B: Biolological Sciences Project Number ERP009377 DOI https://10.1098/rstb.2014.0295
5	2015_4 Details DOI - Open Access	Type 2 immunity-dependent reduction of segmented filamentous bacteria in mice infected with the helminthic parasite Nippostrongylus brasiliensis	None	None
	Authors Fricke WF, Song Y, Wang AJ, Smith A, Grinchuk V, Pei C, Ma B, Lu N, Urban JF Jr, Shea-Donohue T, Zhao A Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal Microbiome Project Number PRJNA255974 DOI https://doi.org/10.1186/s40168-015-0103-8
6	2015_2 Details DOI - Open Access	Chronic Trichuris muris infection decreases diversity of the intestinal microbiota and concomitantly increases the abundance of Lactobacilli	None	None
	Authors Holm JB, Sorobetea D, Kiilerich P, Ramayo-Caldas Y, Estellé J, Ma T, Madsen L, Kristiansen K, Svensson-Frej M Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal PLoS One Project Number ERP006108 DOI https://doi.org/10.1371/journal.pone.0125495
2014
7	2014_3 Details DOI - Open Access	Commensal–pathogen interactions in the intestinal tract: Lactobacilli promote infection with, and are promoted by, helminth parasites	None	None
	Authors Reynolds LA, Smith KA, Filbey KJ, Harcus Y, Hewitson JP, Redpath SA, Valdez Y, Yebra MJ, Finlay BB, Maizels RM Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method Cloning and bacterial 16S rRNA amplicon qPCR Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal Gut Microbes Project Number N/A (clone library) DOI https://doi.org/10.4161/gmic.32155
2013
8	2013_3 Details DOI - Open Access	Infection with the carcinogenic liver fluke Opisthorchis viverrini modifies intestinal and biliary microbiome	None	None
	Authors Plieskatt JL, Deenonpoe R, Mulvenna JP, Krause L, Sripa B, Bethony JM, Brindley PJ Host Species None Control Species Hamster (Mesocricetus auratus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal The FASEB Journal Project Number PRJNA188112 DOI https://doi.org/10.1096/fj.13-232751
9	2013_2 Details DOI - Open Access	Small intestinal nematode infection of mice is associated with increased enterobacterial loads alongside the intestinal tract	None	None
	Authors Rausch S, Held J, Fischer A, Heimesaat MM, Kühl AA, Bereswill S, Hartmann S Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method Bacterial 16S rRNA qPCR Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal PLoS One Project Number N/A DOI https://doi.org/10.1371/journal.pone.0074026
2012
10	2012_3 Details DOI - Open Access	Alterations in the porcine colon microbiota induced by the gastrointestinal nematode Trichuris suis	None	None
	Authors Li RW, Wu S, Li W, Navarro K, Couch RD, Hill D, Urban JF Jr. Host Species None Control Species Pig (Sus scrofa domestica) Infection Type Experimental Parasite Species None Profiling Method Cloning and bacterial 16S rRNA amplicon qPCR Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal Infection and Immunity (WAS: American Society for Microbiology Journals) Project Number PRJNA518074 DOI https://doi.org/10.1128/IAI.00141-12
11	2012_2 Details DOI - Open Access	Worm burden-dependent disruption of the porcine colon microbiota by Trichuris suis infection	None	None
	Authors Wu S, Li RW, Li W, Beshah E, Dawson HD, Urban JF Jr Host Species None Control Species Pig (Sus scrofa domestica) Infection Type Experimental Parasite Species None Profiling Method Whole metagenome shotgun sequencing (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository MG-RAST Journal PLoS One Project Number 4474250.3 to 4474257.3, 4474259.3, 4474261.3 and 4474262.3 DOI https://doi.org/10.1371/journal.pone.0035470
2011
12	2011_1 Details DOI - Open Access	Metagenome plasticity of the bovine abomasal microbiota in immune animals in response to Ostertagia ostertagi Infection	None	None
	Authors Li RW, Wu S, Li W, Huang Y, Gasbarre LC Host Species None Control Species Cattle (Bos taurus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal PLoS One Project Number PRJNA518072 DOI https://doi.org/10.1371/journal.pone.0024417

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