Data: SearchExperimental

Found Studies

	Mdb ID	Title	Host Species	Parasite Species
2020
1	2020_6 Details DOI - Open Access	Experimental infection with the hookworm, Necator americanus, promotes gut microbial diversity in human volunteers with relapsing multiple sclerosis	None	None
	Authors Timothy Jenkins, David Pritchard, Radu Tanasescu, Gary Telford, Marina Paraiakovou, Cris Constantinescu, Cinzia Cantacessi Host Species None Control Species UNKNOWN Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Mendeley Journal TODO Project Number 10.17632/pkk4vtc57r.1 DOI 10.21203/rs.2.24428/v1
2	2020_5 Details DOI - Open Access	Infection with the sheep gastrointestinal nematode Teladorsagia circumcincta increases luminal pathobionts	None	None
	Authors Alba Cortés, John Wills, Xiaopei Su, Rachel E. Hewitt, Jack Robertson, Riccardo Scotti, Daniel R. G. Price, Yvonne Bartley, Tom N. McNeilly, Lutz Krause, Jonathan J. Powell, Alasdair J. Nisbet, Cinzia Cantacessi Host Species None Control Species UNKNOWN Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal TODO Project Number PRJEB33114 DOI 10.1186/s40168-020-00818-9
3	2020_4 Details DOI -	Worm expulsion is independent of alterations in composition of the colonic bacteria that occur during experimental Hymenolepis diminuta-infection in mice.	None	None
	Authors Adam Shute, Arthur Wang, Timothy S. Jayme, Marc Strous, Kathy D. McCoy, Andre G. Buret, Derek M. McKay Host Species None Control Species UNKNOWN Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository TODO Journal Gut Microbes Project Number missing DOI 10.1080/19490976.2019.1688065
4	2020_3 Details DOI -	The gut microbiota response to helminth infection depends on host sex and genotype.	None	None
	Authors Fei Ling, Natalie Steinel, Jesse Weber, Lei Ma, Chris Smith, Decio Correa, Bin Zhu, Daniel Bolnick & Gaoxue Wang Host Species None Control Species UNKNOWN Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository SRA Journal The ISME Journal Project Number PRJNA398629 and PRJNA398630 DOI 10.1038/s41396-020-0589-3
5	2020_2 Details DOI - Open Access	Infection with a small intestinal helminth, Heligmosomoides polygyrus bakeri, consistently alters microbial communities throughout the murine small and large intestine.	None	None
	Authors Alexis Rapin, Audrey Chuat, Luc Lebon, Mario M. Zaiss, Benjamin J. Marsland, Nicola L. Harris Host Species None Control Species UNKNOWN Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository TODO Journal International Journal for Parasitology Project Number PRJEB32288 DOI 10.1016/j.ijpara.2019.09.005
6	2020_1 Details DOI -	Gut microbial signatures associated with moxidectin treatment efficacy of Haemonchus contortus in infected goats.	None	None
	Authors Fang Liu, Yue Xie, Anne M.Zajac, Yan Hu, Raffi V.Aroian, Joseph F.Urban Jr., Robert W.Li Host Species None Control Species UNKNOWN Infection Type Experimental Parasite Species None Profiling Method Whole metagenome shotgun sequencing (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal TODO Project Number PRJNA564780 DOI 10.1016/j.vetmic.2020.108607
2019
7	2019_6 Details DOI -	Schistosoma mansoni worm infection regulates the intestinal microbiota and susceptibility to colitis	None	None
	Authors Achilleas Floudasa, Gabriella Avielloa, Christian Schwartza, Ian B. Jefferyb, Paul W. O'Tooleb and Padraic G. Fallon Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness Not assessed Richness Not assessed Beta diversity Evenness Not assessed Sample Site None Sample Type None Sequence Data Repository Missing Journal TODO Project Number New project number DOI https://doi.org/10.1128/IAI.00275-19
8	2019_5 Details DOI -	Contribution of the gut microbiota in P28GST-mediated anti-inflammatory effects: experimental and clinical insights	None	None
	Authors Benoît Foligné , Coline Plé, Marie Titécat, Arnaud Dendooven, Aurélien Pagny, Catherine Daniel, Elisabeth Singer, Muriel Pottier, Benjamin Bertin, Christel Neut, Dominique Deplanque, Laurent Dubuquoy, Pierre Desreumaux, Monique Capron, Annie Standaert Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Increase Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository TODO Journal TODO Project Number New project number DOI https://doi.org/10.3390/cells8060577
9	2019_4 Details DOI -	Microbiome analysis as a platform R&D tool for parasitic nematode disease management	None	None
	Authors Glenn Hogan, Sidney Walker, Frank Turnbull, Tania Curiao, Alison A. Morrison, Yensi Flores, Leigh Andrews, Marcus J. Claesson, Mark Tangney, Dave J. Bartley Host Species None Control Species Sheep (Ovis aries) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Decrease Richness Decrease Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal TODO Project Number New project number DOI https://doi.org/10.1038/s41396-019-0462-4
10	2019_3 Details DOI -	Chinese liver fluke Clonorchis sinensis infection changes the gut microbiome and increases probiotic Lactobacillus in mice	None	None
	Authors Kim JY, Kim EM, Yi M, Lee J, Lee S, Hwang Y, Yong D, Sohn WM, Yong TS Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal Parasitology Research Project Number Unavailable DOI https://doi.org/10.1007/s00436-018-6179-x
11	2019_20 Details DOI - Open Access	Trichinella spiralis infection decreases the diversity of the intestinal flora in the infected mouse.	None	None
	Authors Sha Liu, Jin Pan, Xiangli Meng, Junping Zhu, Jie Zhou, Xinping Zhu Host Species None Control Species UNKNOWN Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository TODO Journal TODO Project Number PRJNA479716 and PRJNA553325 DOI 10.1016/j.jmii.2019.09.009
12	2019_17 Details DOI -	Ascaris suum infection was associated with a worm-independent reduction in microbial diversity and altered metabolic potential in the porcine gut microbiome.	None	None
	Authors Yueying Wang, Fang Liu, Joseph F. UrbanJr., Oonagh Paerewijck, Peter Geldhof, Robert W.Li Host Species None Control Species UNKNOWN Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository TODO Journal International Journal for Parasitology Project Number SRP127199 DOI 10.1016/j.ijpara.2018.10.007
13	2019_16 Details DOI - Open Access	Cognitive and Microbiome Impacts of Experimental Ancylostoma ceylanicum Hookworm Infections in Hamsters	None	None
	Authors Samuel C. Pan, Doyle V. Ward, Yunqiang Yin, Yan Hu, Mostafa A. Elfawal, Robert E. Clark, and Raffi V. Aroian Host Species None Control Species UNKNOWN Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository TODO Journal Scientific Reports Project Number PRJNA535443 DOI 10.1038/s41598-019-44301-4
14	2019_15 Details DOI - Open Access	Sequential Changes in the Host Gut Microbiota During Infection With the Intestinal Parasitic Nematode Strongyloides venezuelensis	None	None
	Authors Tanzila Afrin, Kazunori Murase, Asuka Kounosu, Vicky L. Hunt, Mark Bligh, Yasunobu Maeda, Akina Hino, Haruhiko Maruyama, Isheng J. Tsai, and Taisei Kikuchi Host Species None Control Species UNKNOWN Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository TODO Journal TODO Project Number SAMD00148911 DOI 10.3389/fcimb.2019.00217
15	2019_14 Details DOI -	Mucosal barrier and Th2 immune responses are enhanced by dietary inulin in pigs infected with Trichuris suis	None	None
	Authors Laura J. Myhill, Sophie Stolzenbach, Tina V. A. Hansen, Kerstin Skovgaard, C. Rune Stensvold, Lee O'Brien Andersen, Peter Nejsum, Helena Mejer, Stig M. Thamsborg, Andrew R. Williams Host Species None Control Species Pig (Sus scrofa domestica) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal Frontiers in Immunology Project Number PRJEB29079 DOI https://doi.org/10.3389/fimmu.2018.02557
16	2019_12 Details DOI -	Exclusive dependence of IL-10Rα signalling on intestinal microbiota homeostasis and control of whipworm infection	None	None
	Authors María A. Duque-Correa , Natasha A. Karp, Catherine McCarthy, Simon Forman, David Goulding, Geetha Sankaranarayanan, Timothy P. Jenkins, Adam J. Reid, Emma L. Cambridge, Carmen Ballesteros Reviriego, The Sanger Mouse Genetics Project, The 3i consortium , Werner Müller, Cinzia Cantacessi, Gordon Dougan, Richard K. Grencis, Matthew Berriman Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Decrease Richness Decrease Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal PLoS Pathogens Project Number ERP016361 DOI https://doi.org/10.1371/journal.ppat.1007265
17	2019_11 Details DOI -	The parasitic worm product ES-62 normalises the gut microbiota bone marrow axis in inflammatory arthritis	None	None
	Authors James Doonan, Anuradha Tarafdar, Miguel A. Pineda, Felicity E. Lumb, Jenny Crowe, Aneesah M. Khan, Paul A. Hoskisson, Margaret M. Harnett, William Harnett Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of 16S rRNA amplicons (Ion Torrent) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness Not assessed Sample Site None Sample Type None Sequence Data Repository TODO Journal TODO Project Number mgm4777616.3, 4777615.3, 4777614.3, 4777613.3, 4777481.3, 4777480.3, 4777479.3, 4777478.3, 4767994.3, 4767993.3, 4767992.3, 4767991.3, 4767990.3, 4767989.3, 4767988.3, 4767987.3, 4767986.3, 4738191.3, 4738190.3, 4738025.3, 4737887.3, 4737053.3 and 4737052.3 DOI https://doi.org/10.1038/s41467-019-09361-0
18	2019_10 Details DOI - Open Access	Suppression of obesity by an intestinal helminth through interactions with intestinal microbiota	None	None
	Authors Chikako Shimokawa, Seiji Obi, Mioko Shibata, Alex Olia, Takashi Imai, Kazutomo Suzue, Hajime Hisaeda Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Not assessed Richness Not assessed Beta diversity Evenness Not assessed Sample Site None Sample Type None Sequence Data Repository TODO Journal Infection and Immunity (WAS: American Society for Microbiology Journals) Project Number New project number DOI https://doi.org/10.1128/IAI.00042-19
2018
19	2018_9 Details DOI -	Intestinal fluke Metagonimus yokogawai infection increases probiotic Lactobacillus in mouse cecum	None	None
	Authors Kim JY, Kim EM, Yi M, Lee J, Lee S, Hwang Y, Yong D, Sohn WM, Yong TS Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal Experimental Parasitology Project Number SRP154312 DOI https://doi.org/10.1016/j.exppara.2018.08.002
20	2018_4 Details DOI - Open Access	Helminth-induced alterations of the gut microbiota exacerbate bacterial colitis	None	None
	Authors Su C, Su L, Li Y, Long SR, Chang J, Zhang W, Walker WA, Xavier RX, Cherayil BJ, Shi HN Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness None - no change Richness Increase Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal Mucosal Immunology Project Number Unavailable DOI https://doi.org/10.1038/mi.2017.20
21	2018_2 Details DOI - Open Access	Schistosoma mansoni infection is associated with quantitative and qualitative modifcations of the mammalian intestinal microbiota	None	None
	Authors Jenkins TP, Peachey LE, Ajami NJ, MacDonald AS, Hsieh MH, Brindley PJ, Cantacessi C, Rinaldi G Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Decrease Richness Decrease Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository Mendeley Journal Scientific Reports Project Number 10.17632/y8c7vpc8zp.1 DOI https://doi.org/10.1038/s41598-018-30412-x
22	2018_13 Details DOI - Open Access	Manipulation of host and parasite microbiotas: survival strategies during chronic nematode infection	None	None
	Authors White EC, Houlden A, Bancroft AJ, Hayes KS, Goldrick M, Grencis RK, Roberts IS Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal Science Advances Project Number PRJEB12611 DOI DOI: 10.1126/sciadv.aap7399
23	2018_12 Details DOI -	The benign helminth Hymenolepis diminuta ameliorates chemically induced colitis in a rat model system	None	None
	Authors Pomajbíková KJ, Jirků M, Levá J, Sobotková K, Morien E, Parfrey LW Host Species None Control Species Rat (Rattus norvegicus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal Parasitology Project Number PRJEB25354 DOI https://doi.org/10.1017/S0031182018000896
24	2018_10 Details DOI - Open Access	Mucosal barrier and Th2 immune responses are enhanced by dietary inulin in pigs infected with Trichuris suis	None	None
	Authors Myhill LJ, Stolzenbach S, Hansen TVA, Skovgaard K, Stensvold CR, O'Brien Andersen L, Nejsum P, Mejer H, Thamsborg SM, Williams AR Host Species None Control Species Pig (Sus scrofa domestica) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal Frontiers in Immunology Project Number PRJEB29079 DOI https://doi.org/10.3389/fimmu.2018.02557
2017
25	2017_3 Details DOI -	Microbial community and ovine host response varies with early and late stages of Haemonchus contortus infection	None	None
	Authors El-Ashram S, Al Nasr I, Abouhaje F, El-Kemary M, Huang G, Dinçel G, Mehmood R, Hu M, Suo X Host Species None Control Species Sheep (Ovis aries) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository Missing Journal Veterinary Research Communications Project Number Unavailable DOI https://doi.org/10.1007/s11259-017-9698-5
26	2017_2 Details DOI - Open Access	A benign helminth alters the host immune system and the gut microbiota in a rat model system	None	None
	Authors Wegener Parfrey L, Jirků M, Šíma R, Jalovecká M, Sak B, Grigore K, Jirků Pomajbíkova K Host Species None Control Species Rat (Rattus norvegicus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal PLoS One Project Number ERP014631 DOI https://doi.org/10.1371/journal.pone.0182205
2016
27	2016_5 Details DOI -	Got worms? Perinatal exposure to helminths prevents persistent immune sensitization and cognitive dysfunction induced by early-life infection	None	None
	Authors Williamson LL, McKenney EA, Holzknecht ZE, Belliveau C, Rawls JF, Poulton S, Parker W, Bilbo SD Host Species None Control Species Rat (Rattus norvegicus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Not assessed Richness Not assessed Beta diversity Evenness Not assessed Sample Site None Sample Type None Sequence Data Repository Missing Journal Brain, Behavior, and Immunity Project Number Unavailable DOI https://doi.org/10.1016/j.bbi.2015.07.006
28	2016_3 Details DOI - Open Access	The effect of helminth infection on the microbial composition and structure of the caprine abomasal microbiome	None	None
	Authors Li RW, Li W, Sun J, Yu P, Baldwin RL, Urban JF Jr Host Species None Control Species Alpine Goat (Capra aegagrus hircus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository MG-RAST Journal Scientific Reports Project Number mgp13390; mgm4629311.3 to mgm4629350.3 DOI https://doi.org/10.1038/srep20606
29	2016_2 Details DOI - Open Access	Impact of helminth infections and nutritional constraints on the small intestine microbiota	None	None
	Authors Cattadori IM, Sebastian A, Hao H, Katani R, Albert I, Eilertson KE, Kapur V, Pathak A, Mitchell S Host Species None Control Species Rabbits (Oryctolagus cuniculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness Decrease Richness Decrease Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal PLoS One Project Number Unavailable DOI https://doi.org/10.1371/journal.pone.0159770
30	2016_1 Details DOI - Open Access	Changes in duodenal tissue-associated microbiota following hookworm infection and consecutive gluten challenges in humans with coeliac disease	None	None
	Authors Giacomin P, Zakrzewski M, Jenkins TP, Su X, Al-Hallaf R, Croese J, de Vries S, Grant A, Mitreva M, Loukas A, Krause L, Cantacessi C Host Species None Control Species Human (Homo Sapiens) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal Scientific Reports Project Number SRP078558 DOI https://doi.org/10.1038/srep36797
2015
31	2015_6 Details DOI - Open Access	Alteration of the rat cecal microbiome during colonization with the helminth Hymenolepis diminuta	None	None
	Authors McKenney EA, Williamson L, Yoder AD, Rawls JF, Bilbo SD, Parker W Host Species None Control Species Rat (Rattus norvegicus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal Gut Microbes Project Number PRJNA270622 DOI https://doi.org/10.1080/19490976.2015.1047128
32	2015_4 Details DOI - Open Access	Type 2 immunity-dependent reduction of segmented filamentous bacteria in mice infected with the helminthic parasite Nippostrongylus brasiliensis	None	None
	Authors Fricke WF, Song Y, Wang AJ, Smith A, Grinchuk V, Pei C, Ma B, Lu N, Urban JF Jr, Shea-Donohue T, Zhao A Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal Microbiome Project Number PRJNA255974 DOI https://doi.org/10.1186/s40168-015-0103-8
33	2015_3 Details DOI - Open Access	Chronic Trichuris muris infection in C57BL/6 mice causes significant changes in host microbiota and metabolome: effects reversed by pathogen clearance	None	None
	Authors Houlden A, Hayes KS, Bancroft AJ, Worthington JJ, Wang P, Grencis RK, Roberts IS Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness Decrease Richness Decrease Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal PLoS One Project Number ERP008663 DOI https://doi.org/10.1371/journal.pone.0125945
34	2015_2 Details DOI - Open Access	Chronic Trichuris muris infection decreases diversity of the intestinal microbiota and concomitantly increases the abundance of Lactobacilli	None	None
	Authors Holm JB, Sorobetea D, Kiilerich P, Ramayo-Caldas Y, Estellé J, Ma T, Madsen L, Kristiansen K, Svensson-Frej M Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal PLoS One Project Number ERP006108 DOI https://doi.org/10.1371/journal.pone.0125495
35	2015_1 Details DOI - Open Access	Experimental hookworm infection and escalating gluten challenges are associated with increased microbial richness in celiac subjects	None	None
	Authors Giacomin P, Zakrzewski M, Croese J, Su X, Sotillo J, McCann L, Navarro S, Mitreva M, Krause L, Loukas A, Cantacessi C Host Species None Control Species Human (Homo Sapiens) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal Scientific Reports Project Number SRP059769 DOI https://doi.org/10.1038/srep13797
2014
36	2014_3 Details DOI - Open Access	Commensal–pathogen interactions in the intestinal tract: Lactobacilli promote infection with, and are promoted by, helminth parasites	None	None
	Authors Reynolds LA, Smith KA, Filbey KJ, Harcus Y, Hewitson JP, Redpath SA, Valdez Y, Yebra MJ, Finlay BB, Maizels RM Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method Cloning and bacterial 16S rRNA amplicon qPCR Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal Gut Microbes Project Number N/A (clone library) DOI https://doi.org/10.4161/gmic.32155
37	2014_2 Details DOI - Open Access	Impact of experimental hookworm infection on the human gut microbiota	None	None
	Authors Cantacessi C, Giacomin P, Croese J, Zakrzewski M, Sotillo J, McCann L, Nolan MJ, Mitreva M, Krause L, Loukas A Host Species None Control Species Human (Homo Sapiens) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal The Journal of Infectious Diseases Project Number SRP041283 DOI https://doi.org/10.1093/infdis/jiu256
2013
38	2013_3 Details DOI - Open Access	Infection with the carcinogenic liver fluke Opisthorchis viverrini modifies intestinal and biliary microbiome	None	None
	Authors Plieskatt JL, Deenonpoe R, Mulvenna JP, Krause L, Sripa B, Bethony JM, Brindley PJ Host Species None Control Species Hamster (Mesocricetus auratus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal The FASEB Journal Project Number PRJNA188112 DOI https://doi.org/10.1096/fj.13-232751
39	2013_2 Details DOI - Open Access	Small intestinal nematode infection of mice is associated with increased enterobacterial loads alongside the intestinal tract	None	None
	Authors Rausch S, Held J, Fischer A, Heimesaat MM, Kühl AA, Bereswill S, Hartmann S Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method Bacterial 16S rRNA qPCR Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal PLoS One Project Number N/A DOI https://doi.org/10.1371/journal.pone.0074026
2012
40	2012_3 Details DOI - Open Access	Alterations in the porcine colon microbiota induced by the gastrointestinal nematode Trichuris suis	None	None
	Authors Li RW, Wu S, Li W, Navarro K, Couch RD, Hill D, Urban JF Jr. Host Species None Control Species Pig (Sus scrofa domestica) Infection Type Experimental Parasite Species None Profiling Method Cloning and bacterial 16S rRNA amplicon qPCR Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal Infection and Immunity (WAS: American Society for Microbiology Journals) Project Number PRJNA518074 DOI https://doi.org/10.1128/IAI.00141-12
41	2012_2 Details DOI - Open Access	Worm burden-dependent disruption of the porcine colon microbiota by Trichuris suis infection	None	None
	Authors Wu S, Li RW, Li W, Beshah E, Dawson HD, Urban JF Jr Host Species None Control Species Pig (Sus scrofa domestica) Infection Type Experimental Parasite Species None Profiling Method Whole metagenome shotgun sequencing (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository MG-RAST Journal PLoS One Project Number 4474250.3 to 4474257.3, 4474259.3, 4474261.3 and 4474262.3 DOI https://doi.org/10.1371/journal.pone.0035470
42	2012_1 Details DOI - Open Access	Therapeutic helminth infection of macaques with idiopathic chronic diarrhea alters the inflammatory signature and mucosal microbiota of the colon	None	None
	Authors Broadhurst MJ, Ardeshir A, Kanwar B, Mirpuri J, Gundra UM, Leung JM, Wiens KE, Vujkovic-Cvijin I, Kim CC, Yarovinsky F, Lerche NW, McCune JM, Loke P Host Species None Control Species Macaca mulatta - captive Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal PLoS Pathogens Project Number N/A DOI https://doi.org/10.1371/journal.ppat.1003000
2011
43	2011_1 Details DOI - Open Access	Metagenome plasticity of the bovine abomasal microbiota in immune animals in response to Ostertagia ostertagi Infection	None	None
	Authors Li RW, Wu S, Li W, Huang Y, Gasbarre LC Host Species None Control Species Cattle (Bos taurus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal PLoS One Project Number PRJNA518072 DOI https://doi.org/10.1371/journal.pone.0024417
2010
44	2010_1 Details DOI -	Alteration of the murine gut microbiota during infection with the parasitic helminth Heligmosomoides polygyrus	None	None
	Authors Walk ST, Blum AM, Ang-Sheng S, Weinstock JV, Young VB Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method Cloning and bacterial 16S rRNA amplicon qPCR Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal Inflammatory Bowel Diseases Project Number N/A (qPCR) DOI https://doi.org/10.1002/ibd.21299

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