Microbiome analysis as a platform R&D tool for parasitic nematode disease management
Export XmlHaemonchus contortus |
Sheep (Ovis aries) |
Abomasum |
Faeces |
Legend | Increase | Decrease |
Bacteroides | |
Firmicutes | |
Candidatus Saccharibacteria |
Below you will find 0 related studies for Haemonchus contortus
Mdb ID | Title | Host Species | Parasite Species |
---|
Below you will find 22 related studies for Sheep (Ovis aries)
Mdb ID | Title | Host Species | Parasite Species | ||||
---|---|---|---|---|---|---|---|
2020 |
|||||||
1 |
2020_6 Details DOI - Open Access |
Experimental infection with the hookworm, Necator americanus, promotes gut microbial diversity in human volunteers with relapsing multiple sclerosis | Human (Homo Sapiens) | Necator americanus | |||
Authors
Timothy Jenkins, David Pritchard, Radu Tanasescu, Gary Telford, Marina Paraiakovou, Cris Constantinescu, Cinzia Cantacessi
Host Species
Human (Homo Sapiens)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Necator americanus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Mendeley
Journal
TODO
Project Number
10.17632/pkk4vtc57r.1
|
|||||||
2 |
2020_5 Details DOI - Open Access |
Infection with the sheep gastrointestinal nematode Teladorsagia circumcincta increases luminal pathobionts | Sheep (Ovis aries) | Teladorsagia circumcincta | |||
Authors
Alba Cortés, John Wills, Xiaopei Su, Rachel E. Hewitt, Jack Robertson, Riccardo Scotti, Daniel R. G. Price, Yvonne Bartley, Tom N. McNeilly, Lutz Krause, Jonathan J. Powell, Alasdair J. Nisbet, Cinzia Cantacessi
Host Species
Sheep (Ovis aries)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Teladorsagia circumcincta
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
TODO
Project Number
PRJEB33114
|
|||||||
3 |
2020_4 Details DOI - |
Worm expulsion is independent of alterations in composition of the colonic bacteria that occur during experimental Hymenolepis diminuta-infection in mice. | Mouse (Mus musculus) | Hymenolepis diminuta | |||
Authors
Adam Shute, Arthur Wang, Timothy S. Jayme, Marc Strous, Kathy D. McCoy, Andre G. Buret, Derek M. McKay
Host Species
Mouse (Mus musculus)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Hymenolepis diminuta
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
Colon
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
Gut Microbes
Project Number
missing
|
|||||||
4 |
2020_2 Details DOI - Open Access |
Infection with a small intestinal helminth, Heligmosomoides polygyrus bakeri, consistently alters microbial communities throughout the murine small and large intestine. | Mouse (Mus musculus) | Heligmosomoides polygyrus | |||
Authors
Alexis Rapin, Audrey Chuat, Luc Lebon, Mario M. Zaiss, Benjamin J. Marsland, Nicola L. Harris
Host Species
Mouse (Mus musculus)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Heligmosomoides polygyrus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
Colon
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
International Journal for Parasitology
Project Number
PRJEB32288
|
|||||||
5 |
2020_1 Details DOI - |
Gut microbial signatures associated with moxidectin treatment efficacy of Haemonchus contortus in infected goats. | Alpine Goat (Capra aegagrus hircus) | Haemonchus contortus | |||
Authors
Fang Liu, Yue Xie, Anne M.Zajac, Yan Hu, Raffi V.Aroian, Joseph F.Urban Jr., Robert W.Li
Host Species
Alpine Goat (Capra aegagrus hircus)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Haemonchus contortus
Profiling Method
Whole metagenome shotgun sequencing (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
Abomasum
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
TODO
Project Number
PRJNA564780
|
|||||||
2019 |
|||||||
6 |
2019_9 Details DOI - Open Access |
Interactions between parasitic infections and the human gut microbiome in Odisha, India | Human (Homo Sapiens) | Ascaris lumbricoides,Necator americanus,Trichuris trichiura | |||
Authors
Tiffany Huwe, Birendra Kumar Prusty, Aisurya Ray, Shaun Lee, Balachandran Ravindran, Edwin Michael
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Ascaris lumbricoides,Necator americanus,Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness Increase
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
The American Journal of Tropical Medicine and Hygiene
Project Number
0
|
|||||||
7 |
2019_8 Details DOI - |
Removal of adult cyathostomins alters faecal microbiota and promotes an inflammatory phenotype in horses | Horse (Equus ferus caballus) | Cyathostominae | |||
Authors
Nicola Walshe, Vivienne Duggan, Raul Cabrera-Rubio, Fiona Crispie, Paul Cotter, Orna Feehan, Grace Mulcahy
Host Species
Horse (Equus ferus caballus)
Control Species
Horse (Equus ferus caballus)
Infection Type
Natural
Parasite Species
Cyathostominae
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase Beta diversity
Evenness Not assessed
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
TODO
Project Number
New project number
|
|||||||
8 |
2019_7 Details DOI - |
The impact of anthelmintic treatment on human gut microbiota based on cross-sectional and pre- and postdeworming comparisons in Western Kenya | Human (Homo Sapiens) | Ascaris lumbricoides,Necator americanus | |||
Authors
Alice V. Easton, Mariam Quiñones, Ivan Vujkovic-Cvijin, Rita G. Oliveira, Stella Kepha, Maurice R. Odiere, Roy M. Anderson, Yasmine Belkaid, Thomas B. Nutman
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Ascaris lumbricoides,Necator americanus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
TODO
Project Number
New project number
|
|||||||
9 |
2019_6 Details DOI - |
Schistosoma mansoni worm infection regulates the intestinal microbiota and susceptibility to colitis | Mouse (Mus musculus) | Schistosoma mansoni | |||
Authors
Achilleas Floudasa, Gabriella Avielloa, Christian Schwartza, Ian B. Jefferyb, Paul W. O'Tooleb and Padraic G. Fallon
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Schistosoma mansoni
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Not assessed
Richness Not assessed Beta diversity
Evenness Not assessed
Sample Site
None
Sample Type
None
Sequence Data Repository
Missing
Journal
TODO
Project Number
New project number
|
|||||||
10 |
2019_5 Details DOI - |
Contribution of the gut microbiota in P28GST-mediated anti-inflammatory effects: experimental and clinical insights | Mouse (Mus musculus) | glutathione S-transferase (P28GST) from Schistosoma | |||
Authors
Benoît Foligné , Coline Plé, Marie Titécat, Arnaud Dendooven, Aurélien Pagny, Catherine Daniel, Elisabeth Singer, Muriel Pottier, Benjamin Bertin, Christel Neut, Dominique Deplanque, Laurent Dubuquoy, Pierre Desreumaux, Monique Capron, Annie Standaert
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
glutathione S-transferase (P28GST) from Schistosoma
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
TODO
Project Number
New project number
|
|||||||
11 |
2019_4 Details DOI - |
Microbiome analysis as a platform R&D tool for parasitic nematode disease management | Sheep (Ovis aries) | Haemonchus contortus | |||
Authors
Glenn Hogan, Sidney Walker, Frank Turnbull, Tania Curiao, Alison A. Morrison, Yensi Flores, Leigh Andrews, Marcus J. Claesson, Mark Tangney, Dave J. Bartley
Host Species
Sheep (Ovis aries)
Control Species
Sheep (Ovis aries)
Infection Type
Experimental
Parasite Species
Haemonchus contortus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Decrease
Richness Decrease Beta diversity
Evenness None - no change
Sample Site
Abomasum
Sample Type
Faeces
Sequence Data Repository
Missing
Journal
TODO
Project Number
New project number
|
|||||||
12 |
2019_20 Details DOI - Open Access |
Trichinella spiralis infection decreases the diversity of the intestinal flora in the infected mouse. | Mouse (Mus musculus) | Trichuris spp. | |||
Authors
Sha Liu, Jin Pan, Xiangli Meng, Junping Zhu, Jie Zhou, Xinping Zhu
Host Species
Mouse (Mus musculus)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Trichuris spp.
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
TODO
Project Number
PRJNA479716 and PRJNA553325
|
|||||||
13 |
2019_19 Details DOI - Open Access |
Linking the effects of helminth infection, diet and the gut microbiota with human whole-blood signatures | Human (Homo Sapiens) | Trichuris trichiura | |||
Authors
Soo Ching Lee, Mei San Tang, Alice V. Easton, Joseph Cooper Devlin, Ling Ling Chua, Ilseung Cho, Foong Ming Moy, Tsung Fei Khang, Yvonne A. L. Lim , P’ng Loke
Host Species
Human (Homo Sapiens)
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS Pathogens
Project Number
PRJEB34956 and PRJEB34957
|
|||||||
14 |
2019_18 Details DOI - Open Access |
The Effect of Gut Microbiome Composition on Human Immune Responses: An Exploration of Interference by Helminth Infections | Human (Homo Sapiens) | None | |||
Authors
Ivonne Martin, Maria M. M. Kaisar, Aprilianto E. Wiria,Firdaus Hamid, Yenny Djuardi, Erliyani Sartono, Bruce A. Rosa, Makedonka Mitreva, Taniawati Supali, Jeanine J. Houwing-Duistermaat, Maria Yazdanbakhsh, and Linda J. Wammes
Host Species
Human (Homo Sapiens)
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
None
Profiling Method
Cloning and bacterial 16S rRNA amplicon qPCR
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
TODO
Project Number
SAMN07688522 to SAMN07688545
|
|||||||
15 |
2019_17 Details DOI - |
Ascaris suum infection was associated with a worm-independent reduction in microbial diversity and altered metabolic potential in the porcine gut microbiome. | Pig (Sus scrofa domestica) | TODO | |||
Authors
Yueying Wang, Fang Liu, Joseph F. UrbanJr., Oonagh Paerewijck, Peter Geldhof, Robert W.Li
Host Species
Pig (Sus scrofa domestica)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
TODO
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
Colon
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
International Journal for Parasitology
Project Number
SRP127199
|
|||||||
16 |
2019_16 Details DOI - Open Access |
Cognitive and Microbiome Impacts of Experimental Ancylostoma ceylanicum Hookworm Infections in Hamsters | Hamster (Mesocricetus auratus) | TODO | |||
Authors
Samuel C. Pan, Doyle V. Ward, Yunqiang Yin, Yan Hu, Mostafa A. Elfawal, Robert E. Clark, and Raffi V. Aroian
Host Species
Hamster (Mesocricetus auratus)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
TODO
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
Scientific Reports
Project Number
PRJNA535443
|
|||||||
17 |
2019_15 Details DOI - Open Access |
Sequential Changes in the Host Gut Microbiota During Infection With the Intestinal Parasitic Nematode Strongyloides venezuelensis | Mouse (Mus musculus) | Strongyles | |||
Authors
Tanzila Afrin, Kazunori Murase, Asuka Kounosu, Vicky L. Hunt, Mark Bligh, Yasunobu Maeda, Akina Hino, Haruhiko Maruyama, Isheng J. Tsai, and Taisei Kikuchi
Host Species
Mouse (Mus musculus)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Strongyles
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
TODO
Project Number
SAMD00148911
|
|||||||
18 |
2019_14 Details DOI - |
Mucosal barrier and Th2 immune responses are enhanced by dietary inulin in pigs infected with Trichuris suis | Pig (Sus scrofa domestica) | Trichuris suis | |||
Authors
Laura J. Myhill, Sophie Stolzenbach, Tina V. A. Hansen, Kerstin Skovgaard, C. Rune Stensvold, Lee O'Brien Andersen, Peter Nejsum, Helena Mejer, Stig M. Thamsborg, Andrew R. Williams
Host Species
Pig (Sus scrofa domestica)
Control Species
Pig (Sus scrofa domestica)
Infection Type
Experimental
Parasite Species
Trichuris suis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
Colon
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
Frontiers in Immunology
Project Number
PRJEB29079
|
|||||||
19 |
2019_13 Details DOI - |
Dysbiosis associated with acute helminth infections in herbivorous youngstock – observations and implications | Horse (Equus ferus caballus) | Anoplocephala perfoliata,Strongyles | |||
Authors
Laura E. Peachey, Cecilia Castro, Rebecca A. Molena, Timothy P. Jenkins, Julian L. Griffin, Cinzia Cantacessi
Host Species
Horse (Equus ferus caballus)
Control Species
Horse (Equus ferus caballus)
Infection Type
Natural
Parasite Species
Anoplocephala perfoliata,Strongyles
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Mendeley
Journal
Scientific Reports
Project Number
DOI: 10.17632/95m8sfd3kt.1
DOI
|
|||||||
20 |
2019_12 Details DOI - |
Exclusive dependence of IL-10Rα signalling on intestinal microbiota homeostasis and control of whipworm infection | Mouse (Mus musculus) | Trichuris muris | |||
Authors
María A. Duque-Correa , Natasha A. Karp, Catherine McCarthy, Simon Forman, David Goulding, Geetha Sankaranarayanan, Timothy P. Jenkins, Adam J. Reid, Emma L. Cambridge, Carmen Ballesteros Reviriego, The Sanger Mouse Genetics Project, The 3i consortium , Werner Müller, Cinzia Cantacessi, Gordon Dougan, Richard K. Grencis, Matthew Berriman
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Trichuris muris
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Decrease
Richness Decrease Beta diversity
Evenness Increase
Sample Site
Caecum
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS Pathogens
Project Number
ERP016361
|
|||||||
21 |
2019_11 Details DOI - |
The parasitic worm product ES-62 normalises the gut microbiota bone marrow axis in inflammatory arthritis | Mouse (Mus musculus) | ES-62,glycoprotein from Acanthocheilonema viteae | |||
Authors
James Doonan, Anuradha Tarafdar, Miguel A. Pineda, Felicity E. Lumb, Jenny Crowe, Aneesah M. Khan, Paul A. Hoskisson, Margaret M. Harnett, William Harnett
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
ES-62,glycoprotein from Acanthocheilonema viteae
Profiling Method
High throughput sequencing of 16S rRNA amplicons (Ion Torrent)
Alpha diversity
Evenness Increase
Richness Increase Beta diversity
Evenness Not assessed
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
TODO
Project Number
mgm4777616.3, 4777615.3, 4777614.3, 4777613.3, 4777481.3, 4777480.3, 4777479.3, 4777478.3, 4767994.3, 4767993.3, 4767992.3, 4767991.3, 4767990.3, 4767989.3, 4767988.3, 4767987.3, 4767986.3, 4738191.3, 4738190.3, 4738025.3, 4737887.3, 4737053.3 and 4737052.3
|
|||||||
22 |
2019_10 Details DOI - Open Access |
Suppression of obesity by an intestinal helminth through interactions with intestinal microbiota | Mouse (Mus musculus) | Heligmosomoides polygyrus | |||
Authors
Chikako Shimokawa, Seiji Obi, Mioko Shibata, Alex Olia, Takashi Imai, Kazutomo Suzue, Hajime Hisaeda
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Heligmosomoides polygyrus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Not assessed
Richness Not assessed Beta diversity
Evenness Not assessed
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
Infection and Immunity (WAS: American Society for Microbiology Journals)
Project Number
New project number
|
Below you will find 44 related Experimental infection studies
Mdb ID | Title | Host Species | Parasite Species | ||||
---|---|---|---|---|---|---|---|
2020 |
|||||||
1 |
2020_6 Details DOI - Open Access |
Experimental infection with the hookworm, Necator americanus, promotes gut microbial diversity in human volunteers with relapsing multiple sclerosis | Human (Homo Sapiens) | Necator americanus | |||
Authors
Timothy Jenkins, David Pritchard, Radu Tanasescu, Gary Telford, Marina Paraiakovou, Cris Constantinescu, Cinzia Cantacessi
Host Species
Human (Homo Sapiens)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Necator americanus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Mendeley
Journal
TODO
Project Number
10.17632/pkk4vtc57r.1
|
|||||||
2 |
2020_5 Details DOI - Open Access |
Infection with the sheep gastrointestinal nematode Teladorsagia circumcincta increases luminal pathobionts | Sheep (Ovis aries) | Teladorsagia circumcincta | |||
Authors
Alba Cortés, John Wills, Xiaopei Su, Rachel E. Hewitt, Jack Robertson, Riccardo Scotti, Daniel R. G. Price, Yvonne Bartley, Tom N. McNeilly, Lutz Krause, Jonathan J. Powell, Alasdair J. Nisbet, Cinzia Cantacessi
Host Species
Sheep (Ovis aries)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Teladorsagia circumcincta
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
TODO
Project Number
PRJEB33114
|
|||||||
3 |
2020_4 Details DOI - |
Worm expulsion is independent of alterations in composition of the colonic bacteria that occur during experimental Hymenolepis diminuta-infection in mice. | Mouse (Mus musculus) | Hymenolepis diminuta | |||
Authors
Adam Shute, Arthur Wang, Timothy S. Jayme, Marc Strous, Kathy D. McCoy, Andre G. Buret, Derek M. McKay
Host Species
Mouse (Mus musculus)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Hymenolepis diminuta
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
Colon
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
Gut Microbes
Project Number
missing
|
|||||||
4 |
2020_3 Details DOI - |
The gut microbiota response to helminth infection depends on host sex and genotype. | Three-spined stickleback (Gasterosteus aculeatus) | TODO | |||
Authors
Fei Ling, Natalie Steinel, Jesse Weber, Lei Ma, Chris Smith, Decio Correa, Bin Zhu, Daniel Bolnick & Gaoxue Wang
Host Species
Three-spined stickleback (Gasterosteus aculeatus)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
TODO
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
Large intestine
Sample Type
None
Sequence Data Repository
SRA
Journal
The ISME Journal
Project Number
PRJNA398629 and PRJNA398630
|
|||||||
5 |
2020_2 Details DOI - Open Access |
Infection with a small intestinal helminth, Heligmosomoides polygyrus bakeri, consistently alters microbial communities throughout the murine small and large intestine. | Mouse (Mus musculus) | Heligmosomoides polygyrus | |||
Authors
Alexis Rapin, Audrey Chuat, Luc Lebon, Mario M. Zaiss, Benjamin J. Marsland, Nicola L. Harris
Host Species
Mouse (Mus musculus)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Heligmosomoides polygyrus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
Colon
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
International Journal for Parasitology
Project Number
PRJEB32288
|
|||||||
6 |
2020_1 Details DOI - |
Gut microbial signatures associated with moxidectin treatment efficacy of Haemonchus contortus in infected goats. | Alpine Goat (Capra aegagrus hircus) | Haemonchus contortus | |||
Authors
Fang Liu, Yue Xie, Anne M.Zajac, Yan Hu, Raffi V.Aroian, Joseph F.Urban Jr., Robert W.Li
Host Species
Alpine Goat (Capra aegagrus hircus)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Haemonchus contortus
Profiling Method
Whole metagenome shotgun sequencing (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
Abomasum
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
TODO
Project Number
PRJNA564780
|
|||||||
2019 |
|||||||
7 |
2019_6 Details DOI - |
Schistosoma mansoni worm infection regulates the intestinal microbiota and susceptibility to colitis | Mouse (Mus musculus) | Schistosoma mansoni | |||
Authors
Achilleas Floudasa, Gabriella Avielloa, Christian Schwartza, Ian B. Jefferyb, Paul W. O'Tooleb and Padraic G. Fallon
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Schistosoma mansoni
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Not assessed
Richness Not assessed Beta diversity
Evenness Not assessed
Sample Site
None
Sample Type
None
Sequence Data Repository
Missing
Journal
TODO
Project Number
New project number
|
|||||||
8 |
2019_5 Details DOI - |
Contribution of the gut microbiota in P28GST-mediated anti-inflammatory effects: experimental and clinical insights | Mouse (Mus musculus) | glutathione S-transferase (P28GST) from Schistosoma | |||
Authors
Benoît Foligné , Coline Plé, Marie Titécat, Arnaud Dendooven, Aurélien Pagny, Catherine Daniel, Elisabeth Singer, Muriel Pottier, Benjamin Bertin, Christel Neut, Dominique Deplanque, Laurent Dubuquoy, Pierre Desreumaux, Monique Capron, Annie Standaert
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
glutathione S-transferase (P28GST) from Schistosoma
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
TODO
Project Number
New project number
|
|||||||
9 |
2019_4 Details DOI - |
Microbiome analysis as a platform R&D tool for parasitic nematode disease management | Sheep (Ovis aries) | Haemonchus contortus | |||
Authors
Glenn Hogan, Sidney Walker, Frank Turnbull, Tania Curiao, Alison A. Morrison, Yensi Flores, Leigh Andrews, Marcus J. Claesson, Mark Tangney, Dave J. Bartley
Host Species
Sheep (Ovis aries)
Control Species
Sheep (Ovis aries)
Infection Type
Experimental
Parasite Species
Haemonchus contortus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Decrease
Richness Decrease Beta diversity
Evenness None - no change
Sample Site
Abomasum
Sample Type
Faeces
Sequence Data Repository
Missing
Journal
TODO
Project Number
New project number
|
|||||||
10 |
2019_3 Details DOI - |
Chinese liver fluke Clonorchis sinensis infection changes the gut microbiome and increases probiotic Lactobacillus in mice | Mouse (Mus musculus) | Clonorchis sinensis | |||
Authors
Kim JY, Kim EM, Yi M, Lee J, Lee S, Hwang Y, Yong D, Sohn WM, Yong TS
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Clonorchis sinensis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Missing
Journal
Parasitology Research
Project Number
Unavailable
|
|||||||
11 |
2019_20 Details DOI - Open Access |
Trichinella spiralis infection decreases the diversity of the intestinal flora in the infected mouse. | Mouse (Mus musculus) | Trichuris spp. | |||
Authors
Sha Liu, Jin Pan, Xiangli Meng, Junping Zhu, Jie Zhou, Xinping Zhu
Host Species
Mouse (Mus musculus)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Trichuris spp.
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
TODO
Project Number
PRJNA479716 and PRJNA553325
|
|||||||
12 |
2019_17 Details DOI - |
Ascaris suum infection was associated with a worm-independent reduction in microbial diversity and altered metabolic potential in the porcine gut microbiome. | Pig (Sus scrofa domestica) | TODO | |||
Authors
Yueying Wang, Fang Liu, Joseph F. UrbanJr., Oonagh Paerewijck, Peter Geldhof, Robert W.Li
Host Species
Pig (Sus scrofa domestica)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
TODO
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
Colon
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
International Journal for Parasitology
Project Number
SRP127199
|
|||||||
13 |
2019_16 Details DOI - Open Access |
Cognitive and Microbiome Impacts of Experimental Ancylostoma ceylanicum Hookworm Infections in Hamsters | Hamster (Mesocricetus auratus) | TODO | |||
Authors
Samuel C. Pan, Doyle V. Ward, Yunqiang Yin, Yan Hu, Mostafa A. Elfawal, Robert E. Clark, and Raffi V. Aroian
Host Species
Hamster (Mesocricetus auratus)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
TODO
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
Scientific Reports
Project Number
PRJNA535443
|
|||||||
14 |
2019_15 Details DOI - Open Access |
Sequential Changes in the Host Gut Microbiota During Infection With the Intestinal Parasitic Nematode Strongyloides venezuelensis | Mouse (Mus musculus) | Strongyles | |||
Authors
Tanzila Afrin, Kazunori Murase, Asuka Kounosu, Vicky L. Hunt, Mark Bligh, Yasunobu Maeda, Akina Hino, Haruhiko Maruyama, Isheng J. Tsai, and Taisei Kikuchi
Host Species
Mouse (Mus musculus)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Strongyles
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
TODO
Project Number
SAMD00148911
|
|||||||
15 |
2019_14 Details DOI - |
Mucosal barrier and Th2 immune responses are enhanced by dietary inulin in pigs infected with Trichuris suis | Pig (Sus scrofa domestica) | Trichuris suis | |||
Authors
Laura J. Myhill, Sophie Stolzenbach, Tina V. A. Hansen, Kerstin Skovgaard, C. Rune Stensvold, Lee O'Brien Andersen, Peter Nejsum, Helena Mejer, Stig M. Thamsborg, Andrew R. Williams
Host Species
Pig (Sus scrofa domestica)
Control Species
Pig (Sus scrofa domestica)
Infection Type
Experimental
Parasite Species
Trichuris suis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
Colon
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
Frontiers in Immunology
Project Number
PRJEB29079
|
|||||||
16 |
2019_12 Details DOI - |
Exclusive dependence of IL-10Rα signalling on intestinal microbiota homeostasis and control of whipworm infection | Mouse (Mus musculus) | Trichuris muris | |||
Authors
María A. Duque-Correa , Natasha A. Karp, Catherine McCarthy, Simon Forman, David Goulding, Geetha Sankaranarayanan, Timothy P. Jenkins, Adam J. Reid, Emma L. Cambridge, Carmen Ballesteros Reviriego, The Sanger Mouse Genetics Project, The 3i consortium , Werner Müller, Cinzia Cantacessi, Gordon Dougan, Richard K. Grencis, Matthew Berriman
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Trichuris muris
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Decrease
Richness Decrease Beta diversity
Evenness Increase
Sample Site
Caecum
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS Pathogens
Project Number
ERP016361
|
|||||||
17 |
2019_11 Details DOI - |
The parasitic worm product ES-62 normalises the gut microbiota bone marrow axis in inflammatory arthritis | Mouse (Mus musculus) | ES-62,glycoprotein from Acanthocheilonema viteae | |||
Authors
James Doonan, Anuradha Tarafdar, Miguel A. Pineda, Felicity E. Lumb, Jenny Crowe, Aneesah M. Khan, Paul A. Hoskisson, Margaret M. Harnett, William Harnett
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
ES-62,glycoprotein from Acanthocheilonema viteae
Profiling Method
High throughput sequencing of 16S rRNA amplicons (Ion Torrent)
Alpha diversity
Evenness Increase
Richness Increase Beta diversity
Evenness Not assessed
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
TODO
Project Number
mgm4777616.3, 4777615.3, 4777614.3, 4777613.3, 4777481.3, 4777480.3, 4777479.3, 4777478.3, 4767994.3, 4767993.3, 4767992.3, 4767991.3, 4767990.3, 4767989.3, 4767988.3, 4767987.3, 4767986.3, 4738191.3, 4738190.3, 4738025.3, 4737887.3, 4737053.3 and 4737052.3
|
|||||||
18 |
2019_10 Details DOI - Open Access |
Suppression of obesity by an intestinal helminth through interactions with intestinal microbiota | Mouse (Mus musculus) | Heligmosomoides polygyrus | |||
Authors
Chikako Shimokawa, Seiji Obi, Mioko Shibata, Alex Olia, Takashi Imai, Kazutomo Suzue, Hajime Hisaeda
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Heligmosomoides polygyrus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Not assessed
Richness Not assessed Beta diversity
Evenness Not assessed
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
Infection and Immunity (WAS: American Society for Microbiology Journals)
Project Number
New project number
|
|||||||
2018 |
|||||||
19 |
2018_9 Details DOI - |
Intestinal fluke Metagonimus yokogawai infection increases probiotic Lactobacillus in mouse cecum | Mouse (Mus musculus) | Metagonimus yokogawai | |||
Authors
Kim JY, Kim EM, Yi M, Lee J, Lee S, Hwang Y, Yong D, Sohn WM, Yong TS
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Metagonimus yokogawai
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
Caecum
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Experimental Parasitology
Project Number
SRP154312
|
|||||||
20 |
2018_4 Details DOI - Open Access |
Helminth-induced alterations of the gut microbiota exacerbate bacterial colitis | Mouse (Mus musculus) | Heligmosomoides polygyrus | |||
Authors
Su C, Su L, Li Y, Long SR, Chang J, Zhang W, Walker WA, Xavier RX, Cherayil BJ, Shi HN
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Heligmosomoides polygyrus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness Increase Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Missing
Journal
Mucosal Immunology
Project Number
Unavailable
|
|||||||
21 |
2018_2 Details DOI - Open Access |
Schistosoma mansoni infection is associated with quantitative and qualitative modifcations of the mammalian intestinal microbiota | Mouse (Mus musculus) | Schistosoma mansoni | |||
Authors
Jenkins TP, Peachey LE, Ajami NJ, MacDonald AS, Hsieh MH, Brindley PJ, Cantacessi C, Rinaldi G
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Schistosoma mansoni
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Decrease
Richness Decrease Beta diversity
Evenness Increase
Sample Site
Large intestine,Small intestine
Sample Type
Lumen
Sequence Data Repository
Mendeley
Journal
Scientific Reports
Project Number
10.17632/y8c7vpc8zp.1
|
|||||||
22 |
2018_13 Details DOI - Open Access |
Manipulation of host and parasite microbiotas: survival strategies during chronic nematode infection | Mouse (Mus musculus) | Trichuris muris | |||
Authors
White EC, Houlden A, Bancroft AJ, Hayes KS, Goldrick M, Grencis RK, Roberts IS
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Trichuris muris
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness Increase
Sample Site
Caecum
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
Science Advances
Project Number
PRJEB12611
|
|||||||
23 |
2018_12 Details DOI - |
The benign helminth Hymenolepis diminuta ameliorates chemically induced colitis in a rat model system | Rat (Rattus norvegicus) | Hymenolepis diminuta | |||
Authors
Pomajbíková KJ, Jirků M, Levá J, Sobotková K, Morien E, Parfrey LW
Host Species
Rat (Rattus norvegicus)
Control Species
Rat (Rattus norvegicus)
Infection Type
Experimental
Parasite Species
Hymenolepis diminuta
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
Parasitology
Project Number
PRJEB25354
|
|||||||
24 |
2018_10 Details DOI - Open Access |
Mucosal barrier and Th2 immune responses are enhanced by dietary inulin in pigs infected with Trichuris suis | Pig (Sus scrofa domestica) | Trichuris suis | |||
Authors
Myhill LJ, Stolzenbach S, Hansen TVA, Skovgaard K, Stensvold CR, O'Brien Andersen L, Nejsum P, Mejer H, Thamsborg SM, Williams AR
Host Species
Pig (Sus scrofa domestica)
Control Species
Pig (Sus scrofa domestica)
Infection Type
Experimental
Parasite Species
Trichuris suis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
Colon
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
Frontiers in Immunology
Project Number
PRJEB29079
|
|||||||
2017 |
|||||||
25 |
2017_3 Details DOI - |
Microbial community and ovine host response varies with early and late stages of Haemonchus contortus infection | Sheep (Ovis aries) | Haemonchus contortus | |||
Authors
El-Ashram S, Al Nasr I, Abouhaje F, El-Kemary M, Huang G, Dinçel G, Mehmood R, Hu M, Suo X
Host Species
Sheep (Ovis aries)
Control Species
Sheep (Ovis aries)
Infection Type
Experimental
Parasite Species
Haemonchus contortus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase Beta diversity
Evenness Increase
Sample Site
Abomasum,Rumen
Sample Type
Fluids
Sequence Data Repository
Missing
Journal
Veterinary Research Communications
Project Number
Unavailable
|
|||||||
26 |
2017_2 Details DOI - Open Access |
A benign helminth alters the host immune system and the gut microbiota in a rat model system | Rat (Rattus norvegicus) | Hymenolepis diminuta | |||
Authors
Wegener Parfrey L, Jirků M, Å íma R, Jalovecká M, Sak B, Grigore K, Jirků Pomajbíkova K
Host Species
Rat (Rattus norvegicus)
Control Species
Rat (Rattus norvegicus)
Infection Type
Experimental
Parasite Species
Hymenolepis diminuta
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS One
Project Number
ERP014631
|
|||||||
2016 |
|||||||
27 |
2016_5 Details DOI - |
Got worms? Perinatal exposure to helminths prevents persistent immune sensitization and cognitive dysfunction induced by early-life infection | Rat (Rattus norvegicus) | Hymenolepis diminuta | |||
Authors
Williamson LL, McKenney EA, Holzknecht ZE, Belliveau C, Rawls JF, Poulton S, Parker W, Bilbo SD
Host Species
Rat (Rattus norvegicus)
Control Species
Rat (Rattus norvegicus)
Infection Type
Experimental
Parasite Species
Hymenolepis diminuta
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Not assessed
Richness Not assessed Beta diversity
Evenness Not assessed
Sample Site
Caecum
Sample Type
None
Sequence Data Repository
Missing
Journal
Brain, Behavior, and Immunity
Project Number
Unavailable
|
|||||||
28 |
2016_3 Details DOI - Open Access |
The effect of helminth infection on the microbial composition and structure of the caprine abomasal microbiome | Alpine Goat (Capra aegagrus hircus) | Haemonchus contortus | |||
Authors
Li RW, Li W, Sun J, Yu P, Baldwin RL, Urban JF Jr
Host Species
Alpine Goat (Capra aegagrus hircus)
Control Species
Alpine Goat (Capra aegagrus hircus)
Infection Type
Experimental
Parasite Species
Haemonchus contortus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
Abomasum
Sample Type
Lumen
Sequence Data Repository
MG-RAST
Journal
Scientific Reports
Project Number
mgp13390; mgm4629311.3 to mgm4629350.3
|
|||||||
29 |
2016_2 Details DOI - Open Access |
Impact of helminth infections and nutritional constraints on the small intestine microbiota | Rabbits (Oryctolagus cuniculus) | Trichostrongylus retortaeformis | |||
Authors
Cattadori IM, Sebastian A, Hao H, Katani R, Albert I, Eilertson KE, Kapur V, Pathak A, Mitchell S
Host Species
Rabbits (Oryctolagus cuniculus)
Control Species
Rabbits (Oryctolagus cuniculus)
Infection Type
Experimental
Parasite Species
Trichostrongylus retortaeformis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Decrease
Richness Decrease Beta diversity
Evenness None - no change
Sample Site
Duodenum
Sample Type
Mucosa
Sequence Data Repository
Missing
Journal
PLoS One
Project Number
Unavailable
|
|||||||
30 |
2016_1 Details DOI - Open Access |
Changes in duodenal tissue-associated microbiota following hookworm infection and consecutive gluten challenges in humans with coeliac disease | Human (Homo Sapiens) | Necator americanus | |||
Authors
Giacomin P, Zakrzewski M, Jenkins TP, Su X, Al-Hallaf R, Croese J, de Vries S, Grant A, Mitreva M, Loukas A, Krause L, Cantacessi C
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Experimental
Parasite Species
Necator americanus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase Beta diversity
Evenness None - no change
Sample Site
Duodenum
Sample Type
Biopsy
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Scientific Reports
Project Number
SRP078558
|
|||||||
2015 |
|||||||
31 |
2015_6 Details DOI - Open Access |
Alteration of the rat cecal microbiome during colonization with the helminth Hymenolepis diminuta | Rat (Rattus norvegicus) | Hymenolepis diminuta | |||
Authors
McKenney EA, Williamson L, Yoder AD, Rawls JF, Bilbo SD, Parker W
Host Species
Rat (Rattus norvegicus)
Control Species
Rat (Rattus norvegicus)
Infection Type
Experimental
Parasite Species
Hymenolepis diminuta
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
Caecum
Sample Type
Lumen
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Gut Microbes
Project Number
PRJNA270622
|
|||||||
32 |
2015_4 Details DOI - Open Access |
Type 2 immunity-dependent reduction of segmented filamentous bacteria in mice infected with the helminthic parasite Nippostrongylus brasiliensis | Mouse (Mus musculus) | Nippostrongylus brasiliensis | |||
Authors
Fricke WF, Song Y, Wang AJ, Smith A, Grinchuk V, Pei C, Ma B, Lu N, Urban JF Jr, Shea-Donohue T, Zhao A
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Nippostrongylus brasiliensis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
Small intestine
Sample Type
Faeces,Lumen
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Microbiome
Project Number
PRJNA255974
|
|||||||
33 |
2015_3 Details DOI - Open Access |
Chronic Trichuris muris infection in C57BL/6 mice causes significant changes in host microbiota and metabolome: effects reversed by pathogen clearance | Mouse (Mus musculus) | Trichuris muris | |||
Authors
Houlden A, Hayes KS, Bancroft AJ, Worthington JJ, Wang P, Grencis RK, Roberts IS
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Trichuris muris
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Decrease
Richness Decrease Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS One
Project Number
ERP008663
|
|||||||
34 |
2015_2 Details DOI - Open Access |
Chronic Trichuris muris infection decreases diversity of the intestinal microbiota and concomitantly increases the abundance of Lactobacilli | Mouse (Mus musculus) | Trichuris muris | |||
Authors
Holm JB, Sorobetea D, Kiilerich P, Ramayo-Caldas Y, Estellé J, Ma T, Madsen L, Kristiansen K, Svensson-Frej M
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Trichuris muris
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase Beta diversity
Evenness Increase
Sample Site
Caecum
Sample Type
Faeces,Lumen
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS One
Project Number
ERP006108
|
|||||||
35 |
2015_1 Details DOI - Open Access |
Experimental hookworm infection and escalating gluten challenges are associated with increased microbial richness in celiac subjects | Human (Homo Sapiens) | Necator americanus | |||
Authors
Giacomin P, Zakrzewski M, Croese J, Su X, Sotillo J, McCann L, Navarro S, Mitreva M, Krause L, Loukas A, Cantacessi C
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Experimental
Parasite Species
Necator americanus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Increase
Richness Increase Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Scientific Reports
Project Number
SRP059769
|
|||||||
2014 |
|||||||
36 |
2014_3 Details DOI - Open Access |
Commensal–pathogen interactions in the intestinal tract: Lactobacilli promote infection with, and are promoted by, helminth parasites | Mouse (Mus musculus) | Heligmosomoides polygyrus | |||
Authors
Reynolds LA, Smith KA, Filbey KJ, Harcus Y, Hewitson JP, Redpath SA, Valdez Y, Yebra MJ, Finlay BB, Maizels RM
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Heligmosomoides polygyrus
Profiling Method
Cloning and bacterial 16S rRNA amplicon qPCR
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
Duodenum
Sample Type
Faeces,Lumen
Sequence Data Repository
Missing
Journal
Gut Microbes
Project Number
N/A (clone library)
|
|||||||
37 |
2014_2 Details DOI - Open Access |
Impact of experimental hookworm infection on the human gut microbiota | Human (Homo Sapiens) | Necator americanus | |||
Authors
Cantacessi C, Giacomin P, Croese J, Zakrzewski M, Sotillo J, McCann L, Nolan MJ, Mitreva M, Krause L, Loukas A
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Experimental
Parasite Species
Necator americanus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
The Journal of Infectious Diseases
Project Number
SRP041283
|
|||||||
2013 |
|||||||
38 |
2013_3 Details DOI - Open Access |
Infection with the carcinogenic liver fluke Opisthorchis viverrini modifies intestinal and biliary microbiome | Hamster (Mesocricetus auratus) | Opisthorchis viverrini | |||
Authors
Plieskatt JL, Deenonpoe R, Mulvenna JP, Krause L, Sripa B, Bethony JM, Brindley PJ
Host Species
Hamster (Mesocricetus auratus)
Control Species
Hamster (Mesocricetus auratus)
Infection Type
Experimental
Parasite Species
Opisthorchis viverrini
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Increase
Richness Increase Beta diversity
Evenness None - no change
Sample Site
Bile ducts,Colorectum
Sample Type
Lumen
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
The FASEB Journal
Project Number
PRJNA188112
|
|||||||
39 |
2013_2 Details DOI - Open Access |
Small intestinal nematode infection of mice is associated with increased enterobacterial loads alongside the intestinal tract | Mouse (Mus musculus) | Heligmosomoides polygyrus | |||
Authors
Rausch S, Held J, Fischer A, Heimesaat MM, Kühl AA, Bereswill S, Hartmann S
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Heligmosomoides polygyrus
Profiling Method
Bacterial 16S rRNA qPCR
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
Caecum,Colon,Ileum
Sample Type
Lumen
Sequence Data Repository
Missing
Journal
PLoS One
Project Number
N/A
|
|||||||
2012 |
|||||||
40 |
2012_3 Details DOI - Open Access |
Alterations in the porcine colon microbiota induced by the gastrointestinal nematode Trichuris suis | Pig (Sus scrofa domestica) | Trichuris suis | |||
Authors
Li RW, Wu S, Li W, Navarro K, Couch RD, Hill D, Urban JF Jr.
Host Species
Pig (Sus scrofa domestica)
Control Species
Pig (Sus scrofa domestica)
Infection Type
Experimental
Parasite Species
Trichuris suis
Profiling Method
Cloning and bacterial 16S rRNA amplicon qPCR
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
Colon
Sample Type
Lumen
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Infection and Immunity (WAS: American Society for Microbiology Journals)
Project Number
PRJNA518074
|
|||||||
41 |
2012_2 Details DOI - Open Access |
Worm burden-dependent disruption of the porcine colon microbiota by Trichuris suis infection | Pig (Sus scrofa domestica) | Trichuris suis | |||
Authors
Wu S, Li RW, Li W, Beshah E, Dawson HD, Urban JF Jr
Host Species
Pig (Sus scrofa domestica)
Control Species
Pig (Sus scrofa domestica)
Infection Type
Experimental
Parasite Species
Trichuris suis
Profiling Method
Whole metagenome shotgun sequencing (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
Colon
Sample Type
Lumen
Sequence Data Repository
MG-RAST
Journal
PLoS One
Project Number
4474250.3 to 4474257.3, 4474259.3, 4474261.3 and 4474262.3
|
|||||||
42 |
2012_1 Details DOI - Open Access |
Therapeutic helminth infection of macaques with idiopathic chronic diarrhea alters the inflammatory signature and mucosal microbiota of the colon | Macaca mulatta - captive | Trichuris trichiura | |||
Authors
Broadhurst MJ, Ardeshir A, Kanwar B, Mirpuri J, Gundra UM, Leung JM, Wiens KE, Vujkovic-Cvijin I, Kim CC, Yarovinsky F, Lerche NW, McCune JM, Loke P
Host Species
Macaca mulatta - captive
Control Species
Macaca mulatta - captive
Infection Type
Experimental
Parasite Species
Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase Beta diversity
Evenness None - no change
Sample Site
Colon
Sample Type
Biopsy,Blood
Sequence Data Repository
Missing
Journal
PLoS Pathogens
Project Number
N/A
|
|||||||
2011 |
|||||||
43 |
2011_1 Details DOI - Open Access |
Metagenome plasticity of the bovine abomasal microbiota in immune animals in response to Ostertagia ostertagi Infection | Cattle (Bos taurus) | Ostertagia ostertagi | |||
Authors
Li RW, Wu S, Li W, Huang Y, Gasbarre LC
Host Species
Cattle (Bos taurus)
Control Species
Cattle (Bos taurus)
Infection Type
Experimental
Parasite Species
Ostertagia ostertagi
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
Abomasum
Sample Type
Lumen
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
PLoS One
Project Number
PRJNA518072
|
|||||||
2010 |
|||||||
44 |
2010_1 Details DOI - |
Alteration of the murine gut microbiota during infection with the parasitic helminth Heligmosomoides polygyrus | Mouse (Mus musculus) | Heligmosomoides polygyrus | |||
Authors
Walk ST, Blum AM, Ang-Sheng S, Weinstock JV, Young VB
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Heligmosomoides polygyrus
Profiling Method
Cloning and bacterial 16S rRNA amplicon qPCR
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
Caecum,Ileum
Sample Type
Mucosa
Sequence Data Repository
Missing
Journal
Inflammatory Bowel Diseases
Project Number
N/A (qPCR)
|