Study Details

Linking the effects of helminth infection, diet and the gut microbiota with human whole-blood signatures

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Main Data

Parasite and host species

Parasite Species 1
Trichuris trichiura
Infected Species 1
Human (Homo Sapiens)
Control Species
UNKNOWN
Infection Type
Natural
Comments
Here authors analyzed the relationship between fecal microbiota and Trichuris trichiura infection inindigenous Malaysians, referred to locally as Orang Asli, and urban participants from the capital city of Malaysia, Kuala Lumpur

Publication and sequence data access

Authors
Soo Ching Lee, Mei San Tang, Alice V. Easton, Joseph Cooper Devlin, Ling Ling Chua, Ilseung Cho, Foong Ming Moy, Tsung Fei Khang, Yvonne A. L. Lim , P’ng Loke
Sequence Data Repository
European Nucleotide Archive (ENA)
Project Number
PRJEB34956 and PRJEB34957
Is Open Access
True
Journal
PLoS Pathogens
Mdb ID
2019_19
Title
Linking the effects of helminth infection, diet and the gut microbiota with human whole-blood signatures
Year
2019

Sample Site and Type

Sample Sites 0
Sample Types 1
Faeces

Effect(s) of helminth infections on gut microbial diversity

Alpha Diversity - Evenness
None - no change
Alpha Diversity - Richness
None - no change
Beta Diversity - Change
None - no change

Bacterial Taxonomy

Legend   Increase   Decrease
Phylum 0
None
Class 0
None
Order 0
None
Family 0
None
Genus 0
None
Species 0
None

Related Data

Below you will find 0 related studies for Trichuris trichiura

Mdb ID Title Host Species Parasite Species

Below you will find 22 related studies for Human (Homo Sapiens)

Mdb ID Title Host Species Parasite Species

2020

1 2020_6
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DOI -
Open Access
Experimental infection with the hookworm, Necator americanus, promotes gut microbial diversity in human volunteers with relapsing multiple sclerosis Human (Homo Sapiens) Necator americanus
Authors
Timothy Jenkins, David Pritchard, Radu Tanasescu, Gary Telford, Marina Paraiakovou, Cris Constantinescu, Cinzia Cantacessi
Host Species
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Control Species
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Infection Type
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Parasite Species
Necator americanus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
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Sample Type
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Sequence Data Repository
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Profiling Method
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Alpha diversity
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Richness None - no change
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Worm expulsion is independent of alterations in composition of the colonic bacteria that occur during experimental Hymenolepis diminuta-infection in mice. Mouse (Mus musculus) Hymenolepis diminuta
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Profiling Method
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Alpha diversity
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Richness None - no change
Beta diversity
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Sample Site
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Profiling Method
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Alpha diversity
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Richness None - no change
Beta diversity
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Sample Site
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Control Species
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Infection Type
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Parasite Species
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Profiling Method
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Alpha diversity
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Richness None - no change
Beta diversity
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Sample Site
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2019

6 2019_9
Details
DOI -
Open Access
Interactions between parasitic infections and the human gut microbiome in Odisha, India Human (Homo Sapiens) Ascaris lumbricoides,Necator americanus,Trichuris trichiura
Authors
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Host Species
Human (Homo Sapiens)
Control Species
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Infection Type
Natural
Parasite Species
Ascaris lumbricoides,Necator americanus,Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness Increase
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
The American Journal of Tropical Medicine and Hygiene
Project Number
0
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Details
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Authors
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Host Species
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Control Species
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Infection Type
Natural
Parasite Species
Cyathostominae
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase
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Sample Site
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Sample Type
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Sequence Data Repository
TODO
Journal
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Project Number
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Details
DOI -
The impact of anthelmintic treatment on human gut microbiota based on cross-sectional and pre- and postdeworming comparisons in Western Kenya Human (Homo Sapiens) Ascaris lumbricoides,Necator americanus
Authors
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Host Species
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Control Species
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Infection Type
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Parasite Species
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Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
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Sequence Data Repository
TODO
Journal
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Project Number
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Details
DOI -
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Authors
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Host Species
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Control Species
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Infection Type
Experimental
Parasite Species
Schistosoma mansoni
Profiling Method
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Alpha diversity
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Richness Not assessed
Beta diversity
Evenness Not assessed
Sample Site
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Sample Type
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Sequence Data Repository
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Journal
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Project Number
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Host Species
Mouse (Mus musculus)
Control Species
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Infection Type
Experimental
Parasite Species
glutathione S-transferase (P28GST) from Schistosoma
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
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Journal
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Project Number
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Details
DOI -
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Authors
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Host Species
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Control Species
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Infection Type
Experimental
Parasite Species
Haemonchus contortus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
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Richness Decrease
Beta diversity
Evenness None - no change
Sample Site
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Sample Type
Faeces
Sequence Data Repository
Missing
Journal
TODO
Project Number
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12 2019_20
Details
DOI -
Open Access
Trichinella spiralis infection decreases the diversity of the intestinal flora in the infected mouse. Mouse (Mus musculus) Trichuris spp.
Authors
Sha Liu, Jin Pan, Xiangli Meng, Junping Zhu, Jie Zhou, Xinping Zhu
Host Species
Mouse (Mus musculus)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Trichuris spp.
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
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Project Number
PRJNA479716 and PRJNA553325
13 2019_19
Details
DOI -
Open Access
Linking the effects of helminth infection, diet and the gut microbiota with human whole-blood signatures Human (Homo Sapiens) Trichuris trichiura
Authors
Soo Ching Lee, Mei San Tang, Alice V. Easton, Joseph Cooper Devlin, Ling Ling Chua, Ilseung Cho, Foong Ming Moy, Tsung Fei Khang, Yvonne A. L. Lim , P’ng Loke
Host Species
Human (Homo Sapiens)
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS Pathogens
Project Number
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14 2019_18
Details
DOI -
Open Access
The Effect of Gut Microbiome Composition on Human Immune Responses: An Exploration of Interference by Helminth Infections Human (Homo Sapiens) None
Authors
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Host Species
Human (Homo Sapiens)
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
None
Profiling Method
Cloning and bacterial 16S rRNA amplicon qPCR
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
TODO
Project Number
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Details
DOI -
Ascaris suum infection was associated with a worm-independent reduction in microbial diversity and altered metabolic potential in the porcine gut microbiome. Pig (Sus scrofa domestica) TODO
Authors
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Host Species
Pig (Sus scrofa domestica)
Control Species
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Infection Type
Experimental
Parasite Species
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Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
Colon
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
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Details
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Cognitive and Microbiome Impacts of Experimental Ancylostoma ceylanicum Hookworm Infections in Hamsters Hamster (Mesocricetus auratus) TODO
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Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
TODO
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
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Project Number
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17 2019_15
Details
DOI -
Open Access
Sequential Changes in the Host Gut Microbiota During Infection With the Intestinal Parasitic Nematode Strongyloides venezuelensis Mouse (Mus musculus) Strongyles
Authors
Tanzila Afrin, Kazunori Murase, Asuka Kounosu, Vicky L. Hunt, Mark Bligh, Yasunobu Maeda, Akina Hino, Haruhiko Maruyama, Isheng J. Tsai, and Taisei Kikuchi
Host Species
Mouse (Mus musculus)
Control Species
UNKNOWN
Infection Type
Experimental
Parasite Species
Strongyles
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
TODO
Project Number
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18 2019_14
Details
DOI -
Mucosal barrier and Th2 immune responses are enhanced by dietary inulin in pigs infected with Trichuris suis Pig (Sus scrofa domestica) Trichuris suis
Authors
Laura J. Myhill, Sophie Stolzenbach, Tina V. A. Hansen, Kerstin Skovgaard, C. Rune Stensvold, Lee O'Brien Andersen, Peter Nejsum, Helena Mejer, Stig M. Thamsborg, Andrew R. Williams
Host Species
Pig (Sus scrofa domestica)
Control Species
Pig (Sus scrofa domestica)
Infection Type
Experimental
Parasite Species
Trichuris suis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
Colon
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
Frontiers in Immunology
Project Number
PRJEB29079
19 2019_13
Details
DOI -
Dysbiosis associated with acute helminth infections in herbivorous youngstock – observations and implications Horse (Equus ferus caballus) Anoplocephala perfoliata,Strongyles
Authors
Laura E. Peachey, Cecilia Castro, Rebecca A. Molena, Timothy P. Jenkins, Julian L. Griffin, Cinzia Cantacessi
Host Species
Horse (Equus ferus caballus)
Control Species
Horse (Equus ferus caballus)
Infection Type
Natural
Parasite Species
Anoplocephala perfoliata,Strongyles
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Mendeley
Journal
Scientific Reports
Project Number
DOI: 10.17632/95m8sfd3kt.1
DOI
20 2019_12
Details
DOI -
Exclusive dependence of IL-10Rα signalling on intestinal microbiota homeostasis and control of whipworm infection Mouse (Mus musculus) Trichuris muris
Authors
María A. Duque-Correa , Natasha A. Karp, Catherine McCarthy, Simon Forman, David Goulding, Geetha Sankaranarayanan, Timothy P. Jenkins, Adam J. Reid, Emma L. Cambridge, Carmen Ballesteros Reviriego, The Sanger Mouse Genetics Project, The 3i consortium , Werner Müller, Cinzia Cantacessi, Gordon Dougan, Richard K. Grencis, Matthew Berriman
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Trichuris muris
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Decrease
Richness Decrease
Beta diversity
Evenness Increase
Sample Site
Caecum
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS Pathogens
Project Number
ERP016361
21 2019_11
Details
DOI -
The parasitic worm product ES-62 normalises the gut microbiota bone marrow axis in inflammatory arthritis Mouse (Mus musculus) ES-62,glycoprotein from Acanthocheilonema viteae
Authors
James Doonan, Anuradha Tarafdar, Miguel A. Pineda, Felicity E. Lumb, Jenny Crowe, Aneesah M. Khan, Paul A. Hoskisson, Margaret M. Harnett, William Harnett
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
ES-62,glycoprotein from Acanthocheilonema viteae
Profiling Method
High throughput sequencing of 16S rRNA amplicons (Ion Torrent)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness Not assessed
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
TODO
Project Number
mgm4777616.3, 4777615.3, 4777614.3, 4777613.3, 4777481.3, 4777480.3, 4777479.3, 4777478.3, 4767994.3, 4767993.3, 4767992.3, 4767991.3, 4767990.3, 4767989.3, 4767988.3, 4767987.3, 4767986.3, 4738191.3, 4738190.3, 4738025.3, 4737887.3, 4737053.3 and 4737052.3
22 2019_10
Details
DOI -
Open Access
Suppression of obesity by an intestinal helminth through interactions with intestinal microbiota Mouse (Mus musculus) Heligmosomoides polygyrus
Authors
Chikako Shimokawa, Seiji Obi, Mioko Shibata, Alex Olia, Takashi Imai, Kazutomo Suzue, Hajime Hisaeda
Host Species
Mouse (Mus musculus)
Control Species
Mouse (Mus musculus)
Infection Type
Experimental
Parasite Species
Heligmosomoides polygyrus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Not assessed
Richness Not assessed
Beta diversity
Evenness Not assessed
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
Infection and Immunity (WAS: American Society for Microbiology Journals)
Project Number
New project number

Below you will find 24 related Natural infection studies

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2019

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Interactions between parasitic infections and the human gut microbiome in Odisha, India Human (Homo Sapiens) Ascaris lumbricoides,Necator americanus,Trichuris trichiura
Authors
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Authors
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Control Species
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Infection Type
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Alpha diversity
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Journal
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Project Number
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Details
DOI -
The impact of anthelmintic treatment on human gut microbiota based on cross-sectional and pre- and postdeworming comparisons in Western Kenya Human (Homo Sapiens) Ascaris lumbricoides,Necator americanus
Authors
Alice V. Easton, Mariam Quiñones, Ivan Vujkovic-Cvijin, Rita G. Oliveira, Stella Kepha, Maurice R. Odiere, Roy M. Anderson, Yasmine Belkaid, Thomas B. Nutman
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Ascaris lumbricoides,Necator americanus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
TODO
Project Number
New project number
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DOI -
Exploring interactions between Blastocystis sp., Strongyloides spp. and the gut microbiomes of wild chimpanzees in Senegal Chimpanzees (Pan troglodytes verus) Strongyloides stercoralis
Authors
Justinn Renelies-Hamilton, Marc Noguera-Julian, Mariona Parera, Roger Paredes, Liliana Pacheco, Elena Dacal, José M.Saugar, José M.Rubio, Michael Poulsen, Pamela C.Köster, David Carmena
Host Species
Chimpanzees (Pan troglodytes verus)
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
Strongyloides stercoralis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
TODO
Project Number
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Details
DOI -
Open Access
Urogenital schistosomiasis is associated with signatures of microbiome dysbiosis in Nigerian adolescents Human (Homo Sapiens) Schistosoma haematobium
Authors
Ajibola O, Rowan AD, Ogedengbe CO, Mshelia MB, Cabral DJ, Eze AA, Obaro S, Belenky P
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Schistosoma haematobium
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness Increase
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Brown Digital Repository
Journal
Scientific Reports
Project Number
https://repository.library.brown.edu/studio/item/bdr:698310/
6 2019_19
Details
DOI -
Open Access
Linking the effects of helminth infection, diet and the gut microbiota with human whole-blood signatures Human (Homo Sapiens) Trichuris trichiura
Authors
Soo Ching Lee, Mei San Tang, Alice V. Easton, Joseph Cooper Devlin, Ling Ling Chua, Ilseung Cho, Foong Ming Moy, Tsung Fei Khang, Yvonne A. L. Lim , P’ng Loke
Host Species
Human (Homo Sapiens)
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS Pathogens
Project Number
PRJEB34956 and PRJEB34957
7 2019_18
Details
DOI -
Open Access
The Effect of Gut Microbiome Composition on Human Immune Responses: An Exploration of Interference by Helminth Infections Human (Homo Sapiens) None
Authors
Ivonne Martin, Maria M. M. Kaisar,  Aprilianto E. Wiria,Firdaus Hamid, Yenny Djuardi, Erliyani Sartono, Bruce A. Rosa,  Makedonka Mitreva, Taniawati Supali, Jeanine J. Houwing-Duistermaat,  Maria Yazdanbakhsh, and Linda J. Wammes
Host Species
Human (Homo Sapiens)
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
None
Profiling Method
Cloning and bacterial 16S rRNA amplicon qPCR
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
TODO
Project Number
SAMN07688522 to SAMN07688545
8 2019_13
Details
DOI -
Dysbiosis associated with acute helminth infections in herbivorous youngstock – observations and implications Horse (Equus ferus caballus) Anoplocephala perfoliata,Strongyles
Authors
Laura E. Peachey, Cecilia Castro, Rebecca A. Molena, Timothy P. Jenkins, Julian L. Griffin, Cinzia Cantacessi
Host Species
Horse (Equus ferus caballus)
Control Species
Horse (Equus ferus caballus)
Infection Type
Natural
Parasite Species
Anoplocephala perfoliata,Strongyles
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Mendeley
Journal
Scientific Reports
Project Number
DOI: 10.17632/95m8sfd3kt.1
DOI
9 2019_1
Details
DOI -
Open Access
Intestinal parasitic infection alters bacterial gut microbiota in children Human (Homo Sapiens) Ascaris lumbricoides,Cryptosporidium,Entamoeba hartmanni,Enterobius vermicularis,Giardia intestinalis,Trichuris trichiura
Authors
Toro-Londono MA, Bedoya-Urrego K, Garcia-Montoya GM, Galvan-Diaz AL, Alzate JF​
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Ascaris lumbricoides,Cryptosporidium,Entamoeba hartmanni,Enterobius vermicularis,Giardia intestinalis,Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Decrease
Richness Decrease
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
PeerJ — the Journal of Life and Environmental Sciences
Project Number
PRJNA487588

2018

10 2018_8
Details
DOI -
Open Access
Strongyle infection and gut microbiota: profiling of resistant and susceptible horses over a grazing season Horse (Equus ferus caballus) Strongyles
Authors
Clark A, Sallé G, Ballan V, Reigner F, Meynadier A, Cortet J, Koch C, Riou M, Blanchard A, Mach N
Host Species
Horse (Equus ferus caballus)
Control Species
Horse (Equus ferus caballus)
Infection Type
Natural
Parasite Species
Strongyles
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
Frontiers in Physiology
Project Number
PRJNA413884
11 2018_7
Details
DOI -
Open Access
The relationships between faecal egg counts and gut microbial composition in UK Thoroughbreds infected by cyathostomins Horse (Equus ferus caballus) Cyathostominae
Authors
Peachey LE, Molena RA, Jenkins TP, Di Cesare A, Traversa D, Hodgkinson JE, Cantacessi C
Host Species
Horse (Equus ferus caballus)
Control Species
Horse (Equus ferus caballus)
Infection Type
Natural
Parasite Species
Cyathostominae
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Mendeley
Journal
International Journal for Parasitology
Project Number
http://doi.org/10.17632/g7chkjrp8f.1
12 2018_6
Details
DOI -
Open Access
A comprehensive analysis of the faecal microbiome and metabolome of Strongyloides stercoralis infected volunteers from a non-endemic area Human (Homo Sapiens) Strongyloides stercoralis
Authors
Jenkins TP, Formenti F, Castro C, Piubelli C, Perandin F, Buonfrate D, Otranto D, Griffin JL, Krause L, Bisoffi Z, Cantacessi C
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Strongyloides stercoralis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Mendeley
Journal
Scientific Reports
Project Number
10.17632/n86dtjvmbv.1)
13 2018_5
Details
DOI -
Open Access
Dynamic changes in human-gut microbiome in relation to a placebo-controlled anthelminthic trial in Indonesia Human (Homo Sapiens) Ancylostoma duodenale,Ascaris lumbricoides,Necator americanus,Strongyloides stercoralis,Trichuris trichiura
Authors
Martin I, Djuardi Y, Sartono E, Rosa BA, Supali T, Mitreva M, Houwing-Duistermaat JJ, Yazdanbakhsh M
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Ancylostoma duodenale,Ascaris lumbricoides,Necator americanus,Strongyloides stercoralis,Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Nematode.net
Journal
PLoS Neglected Tropical Diseases
Project Number
nematode.net/ Indonesia_Microbiome.htm
14 2018_3
Details
DOI -
Open Access
Investigations on the interplays between Schistosoma mansoni, praziquantel and the gut microbiome Human (Homo Sapiens) Schistosoma mansoni
Authors
Schneeberger PHH, Coulibaly JT, Panic G, Daubenberger C, Gueuning M, Frey JE, Keiser J
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Schistosoma mansoni
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Missing
Journal
Parasites & Vectors
Project Number
Unavailable
15 2018_11
Details
DOI -
Open Access
Altered gut microbiota composition in subjects infected with Clonorchis sinensis Human (Homo Sapiens) Clonorchis sinensis
Authors
Xu M, Jiang Z, Huang W, Yin J, Ou S, Jiang Y, Meng L, Cao S, Yu A, Cao J, Shen Y
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Clonorchis sinensis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Frontiers in Microbiology
Project Number
SRP158183
16 2018_1
Details
DOI -
Open Access
Differential human gut microbiome assemblages during soil-transmitted helminth infections in Indonesia and Liberia Human (Homo Sapiens) Ascaris lumbricoides,Necator americanus,Trichuris trichiura
Authors
Rosa MA, Supali T, Gankpala L, Djuardi Y, Sartono E, Zhou Y, Fischer K, Martin J, Tyagi R, Bolay FK, Fischer PU, Yazdanbakhsh M, Mitreva M
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Ascaris lumbricoides,Necator americanus,Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness Increase
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Microbiome
Project Number
PRJNA407815

2017

17 2017_1
Details
DOI -
Open Access
Infections by human gastrointestinal helminths are associated with changes in faecal microbiota diversity and composition Human (Homo Sapiens) Ancylostoma duodenale,Ascaris lumbricoides,Necator americanus,Trichuris trichiura
Authors
Jenkins TP, Rathnayaka Y, Perera PK, Peachey LE, Nolan MJ, Krause L, Rajakaruna RS, Cantacessi C
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Ancylostoma duodenale,Ascaris lumbricoides,Necator americanus,Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness Increase
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
PLoS One
Project Number
PRJEB21999

2016

18 2016_4
Details
DOI -
Open Access
Helminth infections and gut microbiota – a feline perspective Cat (Felis catus) Toxocara cati
Authors
Duarte AM, Jenkins TP, Latrofa MS, Giannelli A, Papadopoulos E, Madeira de Carvalho L, Nolan MJ, Otranto D, Cantacessi C
Host Species
Cat (Felis catus)
Control Species
Cat (Felis catus)
Infection Type
Natural
Parasite Species
Toxocara cati
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Parasites & Vectors
Project Number
PRJNA349988

2015

19 2015_8
Details
DOI -
(CAT) Differences in the faecal microbiome of non-diarrhoeic clinically healthy dogs and cats associated with Giardia duodenalis infection: impact of hookworms and coccidia Cat (Felis catus),Dog (Canis lupus familiaris) Ancylostoma caninum,Giardia intestinalis
Authors
Šlapeta J, Dowd SE, Alanazi AD, Westman ME, Brown GK
Host Species
Cat (Felis catus),Dog (Canis lupus familiaris)
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
Ancylostoma caninum,Giardia intestinalis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
International Journal for Parasitology
Project Number
PRJNA276586
20 2015_8
Details
DOI -
Open Access
Differences in the faecal microbiome in Schistosoma haematobium infected children vs. uninfected children Human (Homo Sapiens) None
Authors
Kay GL, Millard A, Sergeant MJ, Midzi N, Gwisai R, Mduluza T, Ivens A, Nausch N, Mutapi F, Pallen M
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Missing
Journal
PLoS Neglected Tropical Diseases
Project Number
Unavailable
21 2015_7
Details
DOI -
(DOG) - Differences in the faecal microbiome of non-diarrhoeic clinically healthy dogs and cats associated with Giardia duodenalis infection: impact of hookworms and coccidia Cat (Felis catus),Dog (Canis lupus familiaris) Ancylostoma caninum,Giardia intestinalis
Authors
Šlapeta J, Dowd SE, Alanazi AD, Westman ME, Brown GK
Host Species
Cat (Felis catus),Dog (Canis lupus familiaris)
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
Ancylostoma caninum,Giardia intestinalis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
International Journal for Parasitology
Project Number
PRJNA276586
22 2015_5
Details
DOI -
Interactions between multiple helminths and the gut microbiota in wild rodents Wild yellow-necked mouse (Apodemus flavicollis) Heligmosomoides polygyrus,Hymenolepis diminuta,Syphacia spp.
Authors
Kreisinger J, Bastien G, Hauffe HC, Marchesi J, Perkins SE
Host Species
Wild yellow-necked mouse (Apodemus flavicollis)
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
Heligmosomoides polygyrus,Hymenolepis diminuta,Syphacia spp.
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness Increase
Sample Site
Caecum,Colon,Ileum,Stomach
Sample Type
Lumen,Mucosa
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
Philosophical Transactions of the Royal Society London B: Biolological Sciences
Project Number
ERP009377

2014

23 2014_1
Details
DOI -
Open Access
Helminth colonization is associated with increased diversity of the gut microbiota Human (Homo Sapiens) Trichuris spp.
Authors
Lee SC, Tang MS, Lim YAL, Choy SH, Kurtz ZD, Cox LM, Gundra UM, Cho I, Bonneau R, Blaser MJ, Chua KH, Loke P
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Trichuris spp.
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Missing
Journal
PLoS Neglected Tropical Diseases
Project Number
N/A

2013

24 2013_1
Details
DOI -
Open Access
Patent human infections with the whipworm, Trichuris trichiura, are not associated with alterations in the faecal microbiota Human (Homo Sapiens) None
Authors
Cooper P, Walker AW, Reyes J, Chico M, Salter SJ, Vaca M, Parkhill J
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Decrease
Richness Decrease
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS One
Project Number
ERP002465