Study Details

Differences in the faecal microbiome in Schistosoma haematobium infected children vs. uninfected children

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Main Data

Parasite and host species

Parasite Species 0
Infected Species 1
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Comments
This study characterised the faecal microbiota profiles of children from the Murewa district in Zimbabwe infected by Schistosoma haematobium, pre- and post-treatment with praziquantel.

Publication and sequence data access

Authors
Kay GL, Millard A, Sergeant MJ, Midzi N, Gwisai R, Mduluza T, Ivens A, Nausch N, Mutapi F, Pallen M
Sequence Data Repository
Missing
Project Number
Unavailable
Is Open Access
True
Journal
PLoS Neglected Tropical Diseases
Mdb ID
2015_8
Title
Differences in the faecal microbiome in Schistosoma haematobium infected children vs. uninfected children
Year
2015

Sample Site and Type

Sample Sites 0
Sample Types 1
Faeces

Effect(s) of helminth infections on gut microbial diversity

Alpha Diversity - Evenness
None - no change
Alpha Diversity - Richness
None - no change
Beta Diversity - Change
None - no change

Bacterial Taxonomy

Legend   Increase   Decrease
Phylum 0
None
Class 0
None
Order 0
None
Family 0
None
Genus 1
Prevotella
Species 0
None

Related Data

Below you will find 0 related studies for

Mdb ID Title Host Species Parasite Species

Below you will find 14 related studies for Human (Homo Sapiens)

Mdb ID Title Host Species Parasite Species

2019

1 2019_2
Details
DOI -
Open Access
Urogenital schistosomiasis is associated with signatures of microbiome dysbiosis in Nigerian adolescents Human (Homo Sapiens) Schistosoma haematobium
Authors
Ajibola O, Rowan AD, Ogedengbe CO, Mshelia MB, Cabral DJ, Eze AA, Obaro S, Belenky P
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Schistosoma haematobium
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness Increase
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
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Journal
Scientific Reports
Project Number
https://repository.library.brown.edu/studio/item/bdr:698310/
2 2019_1
Details
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Open Access
Intestinal parasitic infection alters bacterial gut microbiota in children Human (Homo Sapiens) Ascaris lumbricoides,Cryptosporidium,Entamoeba hartmanni,Enterobius vermicularis,Giardia intestinalis,Trichuris trichiura
Authors
Toro-Londono MA, Bedoya-Urrego K, Garcia-Montoya GM, Galvan-Diaz AL, Alzate JF​
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Ascaris lumbricoides,Cryptosporidium,Entamoeba hartmanni,Enterobius vermicularis,Giardia intestinalis,Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Decrease
Richness Decrease
Beta diversity
Evenness None - no change
Sample Site
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Sample Type
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Sequence Data Repository
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Journal
PeerJ — the Journal of Life and Environmental Sciences
Project Number
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2018

3 2018_6
Details
DOI -
Open Access
A comprehensive analysis of the faecal microbiome and metabolome of Strongyloides stercoralis infected volunteers from a non-endemic area Human (Homo Sapiens) Strongyloides stercoralis
Authors
Jenkins TP, Formenti F, Castro C, Piubelli C, Perandin F, Buonfrate D, Otranto D, Griffin JL, Krause L, Bisoffi Z, Cantacessi C
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Strongyloides stercoralis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
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Journal
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Project Number
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4 2018_5
Details
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Dynamic changes in human-gut microbiome in relation to a placebo-controlled anthelminthic trial in Indonesia Human (Homo Sapiens) Ancylostoma duodenale,Ascaris lumbricoides,Necator americanus,Strongyloides stercoralis,Trichuris trichiura
Authors
Martin I, Djuardi Y, Sartono E, Rosa BA, Supali T, Mitreva M, Houwing-Duistermaat JJ, Yazdanbakhsh M
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Ancylostoma duodenale,Ascaris lumbricoides,Necator americanus,Strongyloides stercoralis,Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Nematode.net
Journal
PLoS Neglected Tropical Diseases
Project Number
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5 2018_3
Details
DOI -
Open Access
Investigations on the interplays between Schistosoma mansoni, praziquantel and the gut microbiome Human (Homo Sapiens) Schistosoma mansoni
Authors
Schneeberger PHH, Coulibaly JT, Panic G, Daubenberger C, Gueuning M, Frey JE, Keiser J
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Schistosoma mansoni
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Missing
Journal
Parasites & Vectors
Project Number
Unavailable
6 2018_11
Details
DOI -
Open Access
Altered gut microbiota composition in subjects infected with Clonorchis sinensis Human (Homo Sapiens) Clonorchis sinensis
Authors
Xu M, Jiang Z, Huang W, Yin J, Ou S, Jiang Y, Meng L, Cao S, Yu A, Cao J, Shen Y
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Clonorchis sinensis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Frontiers in Microbiology
Project Number
SRP158183
7 2018_1
Details
DOI -
Open Access
Differential human gut microbiome assemblages during soil-transmitted helminth infections in Indonesia and Liberia Human (Homo Sapiens) Ascaris lumbricoides,Necator americanus,Trichuris trichiura
Authors
Rosa MA, Supali T, Gankpala L, Djuardi Y, Sartono E, Zhou Y, Fischer K, Martin J, Tyagi R, Bolay FK, Fischer PU, Yazdanbakhsh M, Mitreva M
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Ascaris lumbricoides,Necator americanus,Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness Increase
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Microbiome
Project Number
PRJNA407815

2017

8 2017_1
Details
DOI -
Open Access
Infections by human gastrointestinal helminths are associated with changes in faecal microbiota diversity and composition Human (Homo Sapiens) Ancylostoma duodenale,Ascaris lumbricoides,Necator americanus,Trichuris trichiura
Authors
Jenkins TP, Rathnayaka Y, Perera PK, Peachey LE, Nolan MJ, Krause L, Rajakaruna RS, Cantacessi C
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Ancylostoma duodenale,Ascaris lumbricoides,Necator americanus,Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness Increase
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
PLoS One
Project Number
PRJEB21999

2016

9 2016_1
Details
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Open Access
Changes in duodenal tissue-associated microbiota following hookworm infection and consecutive gluten challenges in humans with coeliac disease Human (Homo Sapiens) Necator americanus
Authors
Giacomin P, Zakrzewski M, Jenkins TP, Su X, Al-Hallaf R, Croese J, de Vries S, Grant A, Mitreva M, Loukas A, Krause L, Cantacessi C
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Experimental
Parasite Species
Necator americanus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness None - no change
Sample Site
Duodenum
Sample Type
Biopsy
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Scientific Reports
Project Number
SRP078558

2015

10 2015_8
Details
DOI -
Open Access
Differences in the faecal microbiome in Schistosoma haematobium infected children vs. uninfected children Human (Homo Sapiens) None
Authors
Kay GL, Millard A, Sergeant MJ, Midzi N, Gwisai R, Mduluza T, Ivens A, Nausch N, Mutapi F, Pallen M
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Missing
Journal
PLoS Neglected Tropical Diseases
Project Number
Unavailable
11 2015_1
Details
DOI -
Open Access
Experimental hookworm infection and escalating gluten challenges are associated with increased microbial richness in celiac subjects Human (Homo Sapiens) Necator americanus
Authors
Giacomin P, Zakrzewski M, Croese J, Su X, Sotillo J, McCann L, Navarro S, Mitreva M, Krause L, Loukas A, Cantacessi C
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Experimental
Parasite Species
Necator americanus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Scientific Reports
Project Number
SRP059769

2014

12 2014_2
Details
DOI -
Open Access
Impact of experimental hookworm infection on the human gut microbiota Human (Homo Sapiens) Necator americanus
Authors
Cantacessi C, Giacomin P, Croese J, Zakrzewski M, Sotillo J, McCann L, Nolan MJ, Mitreva M, Krause L, Loukas A
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Experimental
Parasite Species
Necator americanus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
The Journal of Infectious Diseases
Project Number
SRP041283
13 2014_1
Details
DOI -
Open Access
Helminth colonization is associated with increased diversity of the gut microbiota Human (Homo Sapiens) Trichuris spp.
Authors
Lee SC, Tang MS, Lim YAL, Choy SH, Kurtz ZD, Cox LM, Gundra UM, Cho I, Bonneau R, Blaser MJ, Chua KH, Loke P
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Trichuris spp.
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Missing
Journal
PLoS Neglected Tropical Diseases
Project Number
N/A

2013

14 2013_1
Details
DOI -
Open Access
Patent human infections with the whipworm, Trichuris trichiura, are not associated with alterations in the faecal microbiota Human (Homo Sapiens) None
Authors
Cooper P, Walker AW, Reyes J, Chico M, Salter SJ, Vaca M, Parkhill J
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Decrease
Richness Decrease
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS One
Project Number
ERP002465

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2019

1 2019_9
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Interactions between parasitic infections and the human gut microbiome in Odisha, India Human (Homo Sapiens) Ascaris lumbricoides,Necator americanus,Trichuris trichiura
Authors
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Host Species
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Control Species
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Profiling Method
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Alpha diversity
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Richness None - no change
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Sample Site
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Horse (Equus ferus caballus)
Control Species
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Infection Type
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Parasite Species
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Profiling Method
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Alpha diversity
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Sample Site
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The impact of anthelmintic treatment on human gut microbiota based on cross-sectional and pre- and postdeworming comparisons in Western Kenya Human (Homo Sapiens) Ascaris lumbricoides,Necator americanus
Authors
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Host Species
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Control Species
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Infection Type
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Parasite Species
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Profiling Method
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Alpha diversity
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Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
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Sample Type
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Sequence Data Repository
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Exploring interactions between Blastocystis sp., Strongyloides spp. and the gut microbiomes of wild chimpanzees in Senegal Chimpanzees (Pan troglodytes verus) Strongyloides stercoralis
Authors
Justinn Renelies-Hamilton, Marc Noguera-Julian, Mariona Parera, Roger Paredes, Liliana Pacheco, Elena Dacal, José M.Saugar, José M.Rubio, Michael Poulsen, Pamela C.Köster, David Carmena
Host Species
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Control Species
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Infection Type
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Parasite Species
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Profiling Method
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Alpha diversity
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Richness None - no change
Beta diversity
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Sample Site
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Sample Type
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Authors
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Host Species
Human (Homo Sapiens)
Control Species
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Infection Type
Natural
Parasite Species
Schistosoma haematobium
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness Increase
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
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Project Number
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Details
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Linking the effects of helminth infection, diet and the gut microbiota with human whole-blood signatures Human (Homo Sapiens) Trichuris trichiura
Authors
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Host Species
Human (Homo Sapiens)
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
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Journal
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Project Number
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7 2019_18
Details
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The Effect of Gut Microbiome Composition on Human Immune Responses: An Exploration of Interference by Helminth Infections Human (Homo Sapiens) None
Authors
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Human (Homo Sapiens)
Control Species
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Infection Type
Natural
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None
Profiling Method
Cloning and bacterial 16S rRNA amplicon qPCR
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Richness None - no change
Beta diversity
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Sample Type
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Authors
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Host Species
Horse (Equus ferus caballus)
Control Species
Horse (Equus ferus caballus)
Infection Type
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Parasite Species
Anoplocephala perfoliata,Strongyles
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
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Sample Type
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Sequence Data Repository
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Journal
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DOI
9 2019_1
Details
DOI -
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Intestinal parasitic infection alters bacterial gut microbiota in children Human (Homo Sapiens) Ascaris lumbricoides,Cryptosporidium,Entamoeba hartmanni,Enterobius vermicularis,Giardia intestinalis,Trichuris trichiura
Authors
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Host Species
Human (Homo Sapiens)
Control Species
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Infection Type
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Parasite Species
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Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
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Host Species
Horse (Equus ferus caballus)
Control Species
Horse (Equus ferus caballus)
Infection Type
Natural
Parasite Species
Strongyles
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
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Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
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Sample Type
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The relationships between faecal egg counts and gut microbial composition in UK Thoroughbreds infected by cyathostomins Horse (Equus ferus caballus) Cyathostominae
Authors
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Host Species
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Profiling Method
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12 2018_6
Details
DOI -
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A comprehensive analysis of the faecal microbiome and metabolome of Strongyloides stercoralis infected volunteers from a non-endemic area Human (Homo Sapiens) Strongyloides stercoralis
Authors
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Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Strongyloides stercoralis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Mendeley
Journal
Scientific Reports
Project Number
10.17632/n86dtjvmbv.1)
13 2018_5
Details
DOI -
Open Access
Dynamic changes in human-gut microbiome in relation to a placebo-controlled anthelminthic trial in Indonesia Human (Homo Sapiens) Ancylostoma duodenale,Ascaris lumbricoides,Necator americanus,Strongyloides stercoralis,Trichuris trichiura
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Martin I, Djuardi Y, Sartono E, Rosa BA, Supali T, Mitreva M, Houwing-Duistermaat JJ, Yazdanbakhsh M
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
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Profiling Method
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Alpha diversity
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Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
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Journal
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Project Number
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14 2018_3
Details
DOI -
Open Access
Investigations on the interplays between Schistosoma mansoni, praziquantel and the gut microbiome Human (Homo Sapiens) Schistosoma mansoni
Authors
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Host Species
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Control Species
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Infection Type
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Parasite Species
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Profiling Method
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Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Missing
Journal
Parasites & Vectors
Project Number
Unavailable
15 2018_11
Details
DOI -
Open Access
Altered gut microbiota composition in subjects infected with Clonorchis sinensis Human (Homo Sapiens) Clonorchis sinensis
Authors
Xu M, Jiang Z, Huang W, Yin J, Ou S, Jiang Y, Meng L, Cao S, Yu A, Cao J, Shen Y
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Clonorchis sinensis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Frontiers in Microbiology
Project Number
SRP158183
16 2018_1
Details
DOI -
Open Access
Differential human gut microbiome assemblages during soil-transmitted helminth infections in Indonesia and Liberia Human (Homo Sapiens) Ascaris lumbricoides,Necator americanus,Trichuris trichiura
Authors
Rosa MA, Supali T, Gankpala L, Djuardi Y, Sartono E, Zhou Y, Fischer K, Martin J, Tyagi R, Bolay FK, Fischer PU, Yazdanbakhsh M, Mitreva M
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Ascaris lumbricoides,Necator americanus,Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness Increase
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Microbiome
Project Number
PRJNA407815

2017

17 2017_1
Details
DOI -
Open Access
Infections by human gastrointestinal helminths are associated with changes in faecal microbiota diversity and composition Human (Homo Sapiens) Ancylostoma duodenale,Ascaris lumbricoides,Necator americanus,Trichuris trichiura
Authors
Jenkins TP, Rathnayaka Y, Perera PK, Peachey LE, Nolan MJ, Krause L, Rajakaruna RS, Cantacessi C
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Ancylostoma duodenale,Ascaris lumbricoides,Necator americanus,Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness Increase
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
PLoS One
Project Number
PRJEB21999

2016

18 2016_4
Details
DOI -
Open Access
Helminth infections and gut microbiota – a feline perspective Cat (Felis catus) Toxocara cati
Authors
Duarte AM, Jenkins TP, Latrofa MS, Giannelli A, Papadopoulos E, Madeira de Carvalho L, Nolan MJ, Otranto D, Cantacessi C
Host Species
Cat (Felis catus)
Control Species
Cat (Felis catus)
Infection Type
Natural
Parasite Species
Toxocara cati
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Parasites & Vectors
Project Number
PRJNA349988

2015

19 2015_8
Details
DOI -
(CAT) Differences in the faecal microbiome of non-diarrhoeic clinically healthy dogs and cats associated with Giardia duodenalis infection: impact of hookworms and coccidia Cat (Felis catus),Dog (Canis lupus familiaris) Ancylostoma caninum,Giardia intestinalis
Authors
Šlapeta J, Dowd SE, Alanazi AD, Westman ME, Brown GK
Host Species
Cat (Felis catus),Dog (Canis lupus familiaris)
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
Ancylostoma caninum,Giardia intestinalis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
International Journal for Parasitology
Project Number
PRJNA276586
20 2015_8
Details
DOI -
Open Access
Differences in the faecal microbiome in Schistosoma haematobium infected children vs. uninfected children Human (Homo Sapiens) None
Authors
Kay GL, Millard A, Sergeant MJ, Midzi N, Gwisai R, Mduluza T, Ivens A, Nausch N, Mutapi F, Pallen M
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Missing
Journal
PLoS Neglected Tropical Diseases
Project Number
Unavailable
21 2015_7
Details
DOI -
(DOG) - Differences in the faecal microbiome of non-diarrhoeic clinically healthy dogs and cats associated with Giardia duodenalis infection: impact of hookworms and coccidia Cat (Felis catus),Dog (Canis lupus familiaris) Ancylostoma caninum,Giardia intestinalis
Authors
Šlapeta J, Dowd SE, Alanazi AD, Westman ME, Brown GK
Host Species
Cat (Felis catus),Dog (Canis lupus familiaris)
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
Ancylostoma caninum,Giardia intestinalis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
International Journal for Parasitology
Project Number
PRJNA276586
22 2015_5
Details
DOI -
Interactions between multiple helminths and the gut microbiota in wild rodents Wild yellow-necked mouse (Apodemus flavicollis) Heligmosomoides polygyrus,Hymenolepis diminuta,Syphacia spp.
Authors
Kreisinger J, Bastien G, Hauffe HC, Marchesi J, Perkins SE
Host Species
Wild yellow-necked mouse (Apodemus flavicollis)
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
Heligmosomoides polygyrus,Hymenolepis diminuta,Syphacia spp.
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness Increase
Sample Site
Caecum,Colon,Ileum,Stomach
Sample Type
Lumen,Mucosa
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
Philosophical Transactions of the Royal Society London B: Biolological Sciences
Project Number
ERP009377

2014

23 2014_1
Details
DOI -
Open Access
Helminth colonization is associated with increased diversity of the gut microbiota Human (Homo Sapiens) Trichuris spp.
Authors
Lee SC, Tang MS, Lim YAL, Choy SH, Kurtz ZD, Cox LM, Gundra UM, Cho I, Bonneau R, Blaser MJ, Chua KH, Loke P
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Trichuris spp.
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Missing
Journal
PLoS Neglected Tropical Diseases
Project Number
N/A

2013

24 2013_1
Details
DOI -
Open Access
Patent human infections with the whipworm, Trichuris trichiura, are not associated with alterations in the faecal microbiota Human (Homo Sapiens) None
Authors
Cooper P, Walker AW, Reyes J, Chico M, Salter SJ, Vaca M, Parkhill J
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Decrease
Richness Decrease
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS One
Project Number
ERP002465