Helminth colonization is associated with increased diversity of the gut microbiota
Export XmlTrichuris spp. |
Human (Homo Sapiens) |
Faeces |
Legend | Increase | Decrease |
Alphaproteobacteria | |
Mollicutes | |
Tenericutes |
Bacteroidales | |
Bifidobacteriales | |
RF32 |
Bifidobacteriaceae | |
Paraprevotellaceae | |
S24-7 |
Bifidobacterium | |
CF231 |
Below you will find 3 related studies for Trichuris spp.
Mdb ID | Title | Host Species | Parasite Species | ||||
---|---|---|---|---|---|---|---|
2014 |
|||||||
1 |
2014_1 Details DOI - Open Access |
Helminth colonization is associated with increased diversity of the gut microbiota | Human (Homo Sapiens) | Trichuris spp. | |||
Authors
Lee SC, Tang MS, Lim YAL, Choy SH, Kurtz ZD, Cox LM, Gundra UM, Cho I, Bonneau R, Blaser MJ, Chua KH, Loke P
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Trichuris spp.
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Missing
Journal
PLoS Neglected Tropical Diseases
Project Number
N/A
|
|||||||
2 |
2014_1 Details DOI - Open Access |
Helminth colonization is associated with increased diversity of the gut microbiota | Human (Homo Sapiens) | Trichuris spp. | |||
Authors
Lee SC, Tang MS, Lim YAL, Choy SH, Kurtz ZD, Cox LM, Gundra UM, Cho I, Bonneau R, Blaser MJ, Chua KH, Loke P
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Trichuris spp.
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Missing
Journal
PLoS Neglected Tropical Diseases
Project Number
N/A
|
|||||||
3 |
2014_1 Details DOI - Open Access |
Helminth colonization is associated with increased diversity of the gut microbiota | Human (Homo Sapiens) | Trichuris spp. | |||
Authors
Lee SC, Tang MS, Lim YAL, Choy SH, Kurtz ZD, Cox LM, Gundra UM, Cho I, Bonneau R, Blaser MJ, Chua KH, Loke P
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Trichuris spp.
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Missing
Journal
PLoS Neglected Tropical Diseases
Project Number
N/A
|
Below you will find 14 related studies for Human (Homo Sapiens)
Mdb ID | Title | Host Species | Parasite Species | ||||
---|---|---|---|---|---|---|---|
2019 |
|||||||
1 |
2019_2 Details DOI - Open Access |
Urogenital schistosomiasis is associated with signatures of microbiome dysbiosis in Nigerian adolescents | Human (Homo Sapiens) | Schistosoma haematobium | |||
Authors
Ajibola O, Rowan AD, Ogedengbe CO, Mshelia MB, Cabral DJ, Eze AA, Obaro S, Belenky P
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Schistosoma haematobium
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness Increase
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Brown Digital Repository
Journal
Scientific Reports
Project Number
https://repository.library.brown.edu/studio/item/bdr:698310/
|
|||||||
2 |
2019_1 Details DOI - Open Access |
Intestinal parasitic infection alters bacterial gut microbiota in children | Human (Homo Sapiens) | Ascaris lumbricoides,Cryptosporidium,Entamoeba hartmanni,Enterobius vermicularis,Giardia intestinalis,Trichuris trichiura | |||
Authors
Toro-Londono MA, Bedoya-Urrego K, Garcia-Montoya GM, Galvan-Diaz AL, Alzate JF
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Ascaris lumbricoides,Cryptosporidium,Entamoeba hartmanni,Enterobius vermicularis,Giardia intestinalis,Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Decrease
Richness Decrease Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
PeerJ — the Journal of Life and Environmental Sciences
Project Number
PRJNA487588
|
|||||||
2018 |
|||||||
3 |
2018_6 Details DOI - Open Access |
A comprehensive analysis of the faecal microbiome and metabolome of Strongyloides stercoralis infected volunteers from a non-endemic area | Human (Homo Sapiens) | Strongyloides stercoralis | |||
Authors
Jenkins TP, Formenti F, Castro C, Piubelli C, Perandin F, Buonfrate D, Otranto D, Griffin JL, Krause L, Bisoffi Z, Cantacessi C
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Strongyloides stercoralis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Mendeley
Journal
Scientific Reports
Project Number
10.17632/n86dtjvmbv.1)
|
|||||||
4 |
2018_5 Details DOI - Open Access |
Dynamic changes in human-gut microbiome in relation to a placebo-controlled anthelminthic trial in Indonesia | Human (Homo Sapiens) | Ancylostoma duodenale,Ascaris lumbricoides,Necator americanus,Strongyloides stercoralis,Trichuris trichiura | |||
Authors
Martin I, Djuardi Y, Sartono E, Rosa BA, Supali T, Mitreva M, Houwing-Duistermaat JJ, Yazdanbakhsh M
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Ancylostoma duodenale,Ascaris lumbricoides,Necator americanus,Strongyloides stercoralis,Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Nematode.net
Journal
PLoS Neglected Tropical Diseases
Project Number
nematode.net/ Indonesia_Microbiome.htm
|
|||||||
5 |
2018_3 Details DOI - Open Access |
Investigations on the interplays between Schistosoma mansoni, praziquantel and the gut microbiome | Human (Homo Sapiens) | Schistosoma mansoni | |||
Authors
Schneeberger PHH, Coulibaly JT, Panic G, Daubenberger C, Gueuning M, Frey JE, Keiser J
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Schistosoma mansoni
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Missing
Journal
Parasites & Vectors
Project Number
Unavailable
|
|||||||
6 |
2018_11 Details DOI - Open Access |
Altered gut microbiota composition in subjects infected with Clonorchis sinensis | Human (Homo Sapiens) | Clonorchis sinensis | |||
Authors
Xu M, Jiang Z, Huang W, Yin J, Ou S, Jiang Y, Meng L, Cao S, Yu A, Cao J, Shen Y
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Clonorchis sinensis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Frontiers in Microbiology
Project Number
SRP158183
|
|||||||
7 |
2018_1 Details DOI - Open Access |
Differential human gut microbiome assemblages during soil-transmitted helminth infections in Indonesia and Liberia | Human (Homo Sapiens) | Ascaris lumbricoides,Necator americanus,Trichuris trichiura | |||
Authors
Rosa MA, Supali T, Gankpala L, Djuardi Y, Sartono E, Zhou Y, Fischer K, Martin J, Tyagi R, Bolay FK, Fischer PU, Yazdanbakhsh M, Mitreva M
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Ascaris lumbricoides,Necator americanus,Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase Beta diversity
Evenness Increase
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Microbiome
Project Number
PRJNA407815
|
|||||||
2017 |
|||||||
8 |
2017_1 Details DOI - Open Access |
Infections by human gastrointestinal helminths are associated with changes in faecal microbiota diversity and composition | Human (Homo Sapiens) | Ancylostoma duodenale,Ascaris lumbricoides,Necator americanus,Trichuris trichiura | |||
Authors
Jenkins TP, Rathnayaka Y, Perera PK, Peachey LE, Nolan MJ, Krause L, Rajakaruna RS, Cantacessi C
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Ancylostoma duodenale,Ascaris lumbricoides,Necator americanus,Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness Increase
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
PLoS One
Project Number
PRJEB21999
|
|||||||
2016 |
|||||||
9 |
2016_1 Details DOI - Open Access |
Changes in duodenal tissue-associated microbiota following hookworm infection and consecutive gluten challenges in humans with coeliac disease | Human (Homo Sapiens) | Necator americanus | |||
Authors
Giacomin P, Zakrzewski M, Jenkins TP, Su X, Al-Hallaf R, Croese J, de Vries S, Grant A, Mitreva M, Loukas A, Krause L, Cantacessi C
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Experimental
Parasite Species
Necator americanus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase Beta diversity
Evenness None - no change
Sample Site
Duodenum
Sample Type
Biopsy
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Scientific Reports
Project Number
SRP078558
|
|||||||
2015 |
|||||||
10 |
2015_8 Details DOI - Open Access |
Differences in the faecal microbiome in Schistosoma haematobium infected children vs. uninfected children | Human (Homo Sapiens) | None | |||
Authors
Kay GL, Millard A, Sergeant MJ, Midzi N, Gwisai R, Mduluza T, Ivens A, Nausch N, Mutapi F, Pallen M
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Missing
Journal
PLoS Neglected Tropical Diseases
Project Number
Unavailable
|
|||||||
11 |
2015_1 Details DOI - Open Access |
Experimental hookworm infection and escalating gluten challenges are associated with increased microbial richness in celiac subjects | Human (Homo Sapiens) | Necator americanus | |||
Authors
Giacomin P, Zakrzewski M, Croese J, Su X, Sotillo J, McCann L, Navarro S, Mitreva M, Krause L, Loukas A, Cantacessi C
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Experimental
Parasite Species
Necator americanus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Increase
Richness Increase Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Scientific Reports
Project Number
SRP059769
|
|||||||
2014 |
|||||||
12 |
2014_2 Details DOI - Open Access |
Impact of experimental hookworm infection on the human gut microbiota | Human (Homo Sapiens) | Necator americanus | |||
Authors
Cantacessi C, Giacomin P, Croese J, Zakrzewski M, Sotillo J, McCann L, Nolan MJ, Mitreva M, Krause L, Loukas A
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Experimental
Parasite Species
Necator americanus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
The Journal of Infectious Diseases
Project Number
SRP041283
|
|||||||
13 |
2014_1 Details DOI - Open Access |
Helminth colonization is associated with increased diversity of the gut microbiota | Human (Homo Sapiens) | Trichuris spp. | |||
Authors
Lee SC, Tang MS, Lim YAL, Choy SH, Kurtz ZD, Cox LM, Gundra UM, Cho I, Bonneau R, Blaser MJ, Chua KH, Loke P
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Trichuris spp.
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Missing
Journal
PLoS Neglected Tropical Diseases
Project Number
N/A
|
|||||||
2013 |
|||||||
14 |
2013_1 Details DOI - Open Access |
Patent human infections with the whipworm, Trichuris trichiura, are not associated with alterations in the faecal microbiota | Human (Homo Sapiens) | None | |||
Authors
Cooper P, Walker AW, Reyes J, Chico M, Salter SJ, Vaca M, Parkhill J
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Decrease
Richness Decrease Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS One
Project Number
ERP002465
|
Below you will find 24 related Natural infection studies
Mdb ID | Title | Host Species | Parasite Species | ||||
---|---|---|---|---|---|---|---|
2019 |
|||||||
1 |
2019_9 Details DOI - Open Access |
Interactions between parasitic infections and the human gut microbiome in Odisha, India | Human (Homo Sapiens) | Ascaris lumbricoides,Necator americanus,Trichuris trichiura | |||
Authors
Tiffany Huwe, Birendra Kumar Prusty, Aisurya Ray, Shaun Lee, Balachandran Ravindran, Edwin Michael
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Ascaris lumbricoides,Necator americanus,Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness Increase
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
The American Journal of Tropical Medicine and Hygiene
Project Number
0
|
|||||||
2 |
2019_8 Details DOI - |
Removal of adult cyathostomins alters faecal microbiota and promotes an inflammatory phenotype in horses | Horse (Equus ferus caballus) | Cyathostominae | |||
Authors
Nicola Walshe, Vivienne Duggan, Raul Cabrera-Rubio, Fiona Crispie, Paul Cotter, Orna Feehan, Grace Mulcahy
Host Species
Horse (Equus ferus caballus)
Control Species
Horse (Equus ferus caballus)
Infection Type
Natural
Parasite Species
Cyathostominae
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase Beta diversity
Evenness Not assessed
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
TODO
Project Number
New project number
|
|||||||
3 |
2019_7 Details DOI - |
The impact of anthelmintic treatment on human gut microbiota based on cross-sectional and pre- and postdeworming comparisons in Western Kenya | Human (Homo Sapiens) | Ascaris lumbricoides,Necator americanus | |||
Authors
Alice V. Easton, Mariam Quiñones, Ivan Vujkovic-Cvijin, Rita G. Oliveira, Stella Kepha, Maurice R. Odiere, Roy M. Anderson, Yasmine Belkaid, Thomas B. Nutman
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Ascaris lumbricoides,Necator americanus
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
TODO
Project Number
New project number
|
|||||||
4 |
2019_21 Details DOI - |
Exploring interactions between Blastocystis sp., Strongyloides spp. and the gut microbiomes of wild chimpanzees in Senegal | Chimpanzees (Pan troglodytes verus) | Strongyloides stercoralis | |||
Authors
Justinn Renelies-Hamilton, Marc Noguera-Julian, Mariona Parera, Roger Paredes, Liliana Pacheco, Elena Dacal, José M.Saugar, José M.Rubio, Michael Poulsen, Pamela C.Köster, David Carmena
Host Species
Chimpanzees (Pan troglodytes verus)
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
Strongyloides stercoralis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
TODO
Project Number
PRJNA523828
|
|||||||
5 |
2019_2 Details DOI - Open Access |
Urogenital schistosomiasis is associated with signatures of microbiome dysbiosis in Nigerian adolescents | Human (Homo Sapiens) | Schistosoma haematobium | |||
Authors
Ajibola O, Rowan AD, Ogedengbe CO, Mshelia MB, Cabral DJ, Eze AA, Obaro S, Belenky P
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Schistosoma haematobium
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness Increase
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Brown Digital Repository
Journal
Scientific Reports
Project Number
https://repository.library.brown.edu/studio/item/bdr:698310/
|
|||||||
6 |
2019_19 Details DOI - Open Access |
Linking the effects of helminth infection, diet and the gut microbiota with human whole-blood signatures | Human (Homo Sapiens) | Trichuris trichiura | |||
Authors
Soo Ching Lee, Mei San Tang, Alice V. Easton, Joseph Cooper Devlin, Ling Ling Chua, Ilseung Cho, Foong Ming Moy, Tsung Fei Khang, Yvonne A. L. Lim , P’ng Loke
Host Species
Human (Homo Sapiens)
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS Pathogens
Project Number
PRJEB34956 and PRJEB34957
|
|||||||
7 |
2019_18 Details DOI - Open Access |
The Effect of Gut Microbiome Composition on Human Immune Responses: An Exploration of Interference by Helminth Infections | Human (Homo Sapiens) | None | |||
Authors
Ivonne Martin, Maria M. M. Kaisar, Aprilianto E. Wiria,Firdaus Hamid, Yenny Djuardi, Erliyani Sartono, Bruce A. Rosa, Makedonka Mitreva, Taniawati Supali, Jeanine J. Houwing-Duistermaat, Maria Yazdanbakhsh, and Linda J. Wammes
Host Species
Human (Homo Sapiens)
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
None
Profiling Method
Cloning and bacterial 16S rRNA amplicon qPCR
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
TODO
Journal
TODO
Project Number
SAMN07688522 to SAMN07688545
|
|||||||
8 |
2019_13 Details DOI - |
Dysbiosis associated with acute helminth infections in herbivorous youngstock – observations and implications | Horse (Equus ferus caballus) | Anoplocephala perfoliata,Strongyles | |||
Authors
Laura E. Peachey, Cecilia Castro, Rebecca A. Molena, Timothy P. Jenkins, Julian L. Griffin, Cinzia Cantacessi
Host Species
Horse (Equus ferus caballus)
Control Species
Horse (Equus ferus caballus)
Infection Type
Natural
Parasite Species
Anoplocephala perfoliata,Strongyles
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Mendeley
Journal
Scientific Reports
Project Number
DOI: 10.17632/95m8sfd3kt.1
DOI
|
|||||||
9 |
2019_1 Details DOI - Open Access |
Intestinal parasitic infection alters bacterial gut microbiota in children | Human (Homo Sapiens) | Ascaris lumbricoides,Cryptosporidium,Entamoeba hartmanni,Enterobius vermicularis,Giardia intestinalis,Trichuris trichiura | |||
Authors
Toro-Londono MA, Bedoya-Urrego K, Garcia-Montoya GM, Galvan-Diaz AL, Alzate JF
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Ascaris lumbricoides,Cryptosporidium,Entamoeba hartmanni,Enterobius vermicularis,Giardia intestinalis,Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Decrease
Richness Decrease Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
PeerJ — the Journal of Life and Environmental Sciences
Project Number
PRJNA487588
|
|||||||
2018 |
|||||||
10 |
2018_8 Details DOI - Open Access |
Strongyle infection and gut microbiota: profiling of resistant and susceptible horses over a grazing season | Horse (Equus ferus caballus) | Strongyles | |||
Authors
Clark A, Sallé G, Ballan V, Reigner F, Meynadier A, Cortet J, Koch C, Riou M, Blanchard A, Mach N
Host Species
Horse (Equus ferus caballus)
Control Species
Horse (Equus ferus caballus)
Infection Type
Natural
Parasite Species
Strongyles
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
Frontiers in Physiology
Project Number
PRJNA413884
|
|||||||
11 |
2018_7 Details DOI - Open Access |
The relationships between faecal egg counts and gut microbial composition in UK Thoroughbreds infected by cyathostomins | Horse (Equus ferus caballus) | Cyathostominae | |||
Authors
Peachey LE, Molena RA, Jenkins TP, Di Cesare A, Traversa D, Hodgkinson JE, Cantacessi C
Host Species
Horse (Equus ferus caballus)
Control Species
Horse (Equus ferus caballus)
Infection Type
Natural
Parasite Species
Cyathostominae
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Mendeley
Journal
International Journal for Parasitology
Project Number
http://doi.org/10.17632/g7chkjrp8f.1
|
|||||||
12 |
2018_6 Details DOI - Open Access |
A comprehensive analysis of the faecal microbiome and metabolome of Strongyloides stercoralis infected volunteers from a non-endemic area | Human (Homo Sapiens) | Strongyloides stercoralis | |||
Authors
Jenkins TP, Formenti F, Castro C, Piubelli C, Perandin F, Buonfrate D, Otranto D, Griffin JL, Krause L, Bisoffi Z, Cantacessi C
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Strongyloides stercoralis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Mendeley
Journal
Scientific Reports
Project Number
10.17632/n86dtjvmbv.1)
|
|||||||
13 |
2018_5 Details DOI - Open Access |
Dynamic changes in human-gut microbiome in relation to a placebo-controlled anthelminthic trial in Indonesia | Human (Homo Sapiens) | Ancylostoma duodenale,Ascaris lumbricoides,Necator americanus,Strongyloides stercoralis,Trichuris trichiura | |||
Authors
Martin I, Djuardi Y, Sartono E, Rosa BA, Supali T, Mitreva M, Houwing-Duistermaat JJ, Yazdanbakhsh M
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Ancylostoma duodenale,Ascaris lumbricoides,Necator americanus,Strongyloides stercoralis,Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Nematode.net
Journal
PLoS Neglected Tropical Diseases
Project Number
nematode.net/ Indonesia_Microbiome.htm
|
|||||||
14 |
2018_3 Details DOI - Open Access |
Investigations on the interplays between Schistosoma mansoni, praziquantel and the gut microbiome | Human (Homo Sapiens) | Schistosoma mansoni | |||
Authors
Schneeberger PHH, Coulibaly JT, Panic G, Daubenberger C, Gueuning M, Frey JE, Keiser J
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Schistosoma mansoni
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Missing
Journal
Parasites & Vectors
Project Number
Unavailable
|
|||||||
15 |
2018_11 Details DOI - Open Access |
Altered gut microbiota composition in subjects infected with Clonorchis sinensis | Human (Homo Sapiens) | Clonorchis sinensis | |||
Authors
Xu M, Jiang Z, Huang W, Yin J, Ou S, Jiang Y, Meng L, Cao S, Yu A, Cao J, Shen Y
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Clonorchis sinensis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Frontiers in Microbiology
Project Number
SRP158183
|
|||||||
16 |
2018_1 Details DOI - Open Access |
Differential human gut microbiome assemblages during soil-transmitted helminth infections in Indonesia and Liberia | Human (Homo Sapiens) | Ascaris lumbricoides,Necator americanus,Trichuris trichiura | |||
Authors
Rosa MA, Supali T, Gankpala L, Djuardi Y, Sartono E, Zhou Y, Fischer K, Martin J, Tyagi R, Bolay FK, Fischer PU, Yazdanbakhsh M, Mitreva M
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Ascaris lumbricoides,Necator americanus,Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase Beta diversity
Evenness Increase
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Microbiome
Project Number
PRJNA407815
|
|||||||
2017 |
|||||||
17 |
2017_1 Details DOI - Open Access |
Infections by human gastrointestinal helminths are associated with changes in faecal microbiota diversity and composition | Human (Homo Sapiens) | Ancylostoma duodenale,Ascaris lumbricoides,Necator americanus,Trichuris trichiura | |||
Authors
Jenkins TP, Rathnayaka Y, Perera PK, Peachey LE, Nolan MJ, Krause L, Rajakaruna RS, Cantacessi C
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Ancylostoma duodenale,Ascaris lumbricoides,Necator americanus,Trichuris trichiura
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness Increase
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
PLoS One
Project Number
PRJEB21999
|
|||||||
2016 |
|||||||
18 |
2016_4 Details DOI - Open Access |
Helminth infections and gut microbiota – a feline perspective | Cat (Felis catus) | Toxocara cati | |||
Authors
Duarte AM, Jenkins TP, Latrofa MS, Giannelli A, Papadopoulos E, Madeira de Carvalho L, Nolan MJ, Otranto D, Cantacessi C
Host Species
Cat (Felis catus)
Control Species
Cat (Felis catus)
Infection Type
Natural
Parasite Species
Toxocara cati
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Parasites & Vectors
Project Number
PRJNA349988
|
|||||||
2015 |
|||||||
19 |
2015_8 Details DOI - |
(CAT) Differences in the faecal microbiome of non-diarrhoeic clinically healthy dogs and cats associated with Giardia duodenalis infection: impact of hookworms and coccidia | Cat (Felis catus),Dog (Canis lupus familiaris) | Ancylostoma caninum,Giardia intestinalis | |||
Authors
Šlapeta J, Dowd SE, Alanazi AD, Westman ME, Brown GK
Host Species
Cat (Felis catus),Dog (Canis lupus familiaris)
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
Ancylostoma caninum,Giardia intestinalis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
International Journal for Parasitology
Project Number
PRJNA276586
|
|||||||
20 |
2015_8 Details DOI - Open Access |
Differences in the faecal microbiome in Schistosoma haematobium infected children vs. uninfected children | Human (Homo Sapiens) | None | |||
Authors
Kay GL, Millard A, Sergeant MJ, Midzi N, Gwisai R, Mduluza T, Ivens A, Nausch N, Mutapi F, Pallen M
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Missing
Journal
PLoS Neglected Tropical Diseases
Project Number
Unavailable
|
|||||||
21 |
2015_7 Details DOI - |
(DOG) - Differences in the faecal microbiome of non-diarrhoeic clinically healthy dogs and cats associated with Giardia duodenalis infection: impact of hookworms and coccidia | Cat (Felis catus),Dog (Canis lupus familiaris) | Ancylostoma caninum,Giardia intestinalis | |||
Authors
Šlapeta J, Dowd SE, Alanazi AD, Westman ME, Brown GK
Host Species
Cat (Felis catus),Dog (Canis lupus familiaris)
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
Ancylostoma caninum,Giardia intestinalis
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
International Journal for Parasitology
Project Number
PRJNA276586
|
|||||||
22 |
2015_5 Details DOI - |
Interactions between multiple helminths and the gut microbiota in wild rodents | Wild yellow-necked mouse (Apodemus flavicollis) | Heligmosomoides polygyrus,Hymenolepis diminuta,Syphacia spp. | |||
Authors
Kreisinger J, Bastien G, Hauffe HC, Marchesi J, Perkins SE
Host Species
Wild yellow-necked mouse (Apodemus flavicollis)
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
Heligmosomoides polygyrus,Hymenolepis diminuta,Syphacia spp.
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change Beta diversity
Evenness Increase
Sample Site
Caecum,Colon,Ileum,Stomach
Sample Type
Lumen,Mucosa
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
Philosophical Transactions of the Royal Society London B: Biolological Sciences
Project Number
ERP009377
|
|||||||
2014 |
|||||||
23 |
2014_1 Details DOI - Open Access |
Helminth colonization is associated with increased diversity of the gut microbiota | Human (Homo Sapiens) | Trichuris spp. | |||
Authors
Lee SC, Tang MS, Lim YAL, Choy SH, Kurtz ZD, Cox LM, Gundra UM, Cho I, Bonneau R, Blaser MJ, Chua KH, Loke P
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
Trichuris spp.
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
Faeces
Sequence Data Repository
Missing
Journal
PLoS Neglected Tropical Diseases
Project Number
N/A
|
|||||||
2013 |
|||||||
24 |
2013_1 Details DOI - Open Access |
Patent human infections with the whipworm, Trichuris trichiura, are not associated with alterations in the faecal microbiota | Human (Homo Sapiens) | None | |||
Authors
Cooper P, Walker AW, Reyes J, Chico M, Salter SJ, Vaca M, Parkhill J
Host Species
Human (Homo Sapiens)
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Decrease
Richness Decrease Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS One
Project Number
ERP002465
|