Data: SearchFaeces

Found Studies

	Mdb ID	Title	Host Species	Parasite Species
2019
1	2019_3 Details DOI -	Chinese liver fluke Clonorchis sinensis infection changes the gut microbiome and increases probiotic Lactobacillus in mice	None	None
	Authors Kim JY, Kim EM, Yi M, Lee J, Lee S, Hwang Y, Yong D, Sohn WM, Yong TS Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal Parasitology Research Project Number Unavailable DOI https://doi.org/10.1007/s00436-018-6179-x
2	2019_2 Details DOI - Open Access	Urogenital schistosomiasis is associated with signatures of microbiome dysbiosis in Nigerian adolescents	None	None
	Authors Ajibola O, Rowan AD, Ogedengbe CO, Mshelia MB, Cabral DJ, Eze AA, Obaro S, Belenky P Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository Brown Digital Repository Journal Scientific Reports Project Number https://repository.library.brown.edu/studio/item/bdr:698310/ DOI https://doi.org/10.1038/s41598-018-36709-1
3	2019_1 Details DOI - Open Access	Intestinal parasitic infection alters bacterial gut microbiota in children	None	None
	Authors Toro-Londono MA, Bedoya-Urrego K, Garcia-Montoya GM, Galvan-Diaz AL, Alzate JF Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Decrease Richness Decrease Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal PeerJ — the Journal of Life and Environmental Sciences Project Number PRJNA487588 DOI https://doi.org/10.7717/peerj.6200
2018
4	2018_8 Details DOI - Open Access	Strongyle infection and gut microbiota: profiling of resistant and susceptible horses over a grazing season	None	None
	Authors Clark A, Sallé G, Ballan V, Reigner F, Meynadier A, Cortet J, Koch C, Riou M, Blanchard A, Mach N Host Species None Control Species Horse (Equus ferus caballus) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal Frontiers in Physiology Project Number PRJNA413884 DOI https://doi.org/10.3389/fphys.2018.00272
5	2018_7 Details DOI - Open Access	The relationships between faecal egg counts and gut microbial composition in UK Thoroughbreds infected by cyathostomins	None	None
	Authors Peachey LE, Molena RA, Jenkins TP, Di Cesare A, Traversa D, Hodgkinson JE, Cantacessi C Host Species None Control Species Horse (Equus ferus caballus) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Mendeley Journal International Journal for Parasitology Project Number http://doi.org/10.17632/g7chkjrp8f.1 DOI https://doi.org/10.1016/j.ijpara.2017.11.003
6	2018_6 Details DOI - Open Access	A comprehensive analysis of the faecal microbiome and metabolome of Strongyloides stercoralis infected volunteers from a non-endemic area	None	None
	Authors Jenkins TP, Formenti F, Castro C, Piubelli C, Perandin F, Buonfrate D, Otranto D, Griffin JL, Krause L, Bisoffi Z, Cantacessi C Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Mendeley Journal Scientific Reports Project Number 10.17632/n86dtjvmbv.1) DOI 10.1038/s41598-018-33937-3
7	2018_5 Details DOI - Open Access	Dynamic changes in human-gut microbiome in relation to a placebo-controlled anthelminthic trial in Indonesia	None	None
	Authors Martin I, Djuardi Y, Sartono E, Rosa BA, Supali T, Mitreva M, Houwing-Duistermaat JJ, Yazdanbakhsh M Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Nematode.net Journal PLoS Neglected Tropical Diseases Project Number nematode.net/ Indonesia_Microbiome.htm DOI https://doi.org/10.1371/journal.pntd.0006620
8	2018_4 Details DOI - Open Access	Helminth-induced alterations of the gut microbiota exacerbate bacterial colitis	None	None
	Authors Su C, Su L, Li Y, Long SR, Chang J, Zhang W, Walker WA, Xavier RX, Cherayil BJ, Shi HN Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness None - no change Richness Increase Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal Mucosal Immunology Project Number Unavailable DOI https://doi.org/10.1038/mi.2017.20
9	2018_3 Details DOI - Open Access	Investigations on the interplays between Schistosoma mansoni, praziquantel and the gut microbiome	None	None
	Authors Schneeberger PHH, Coulibaly JT, Panic G, Daubenberger C, Gueuning M, Frey JE, Keiser J Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal Parasites & Vectors Project Number Unavailable DOI https://doi.org/10.1186/s13071-018-2739-2
10	2018_12 Details DOI -	The benign helminth Hymenolepis diminuta ameliorates chemically induced colitis in a rat model system	None	None
	Authors Pomajbíková KJ, Jirků M, Levá J, Sobotková K, Morien E, Parfrey LW Host Species None Control Species Rat (Rattus norvegicus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal Parasitology Project Number PRJEB25354 DOI https://doi.org/10.1017/S0031182018000896
11	2018_11 Details DOI - Open Access	Altered gut microbiota composition in subjects infected with Clonorchis sinensis	None	None
	Authors Xu M, Jiang Z, Huang W, Yin J, Ou S, Jiang Y, Meng L, Cao S, Yu A, Cao J, Shen Y Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal Frontiers in Microbiology Project Number SRP158183 DOI https://doi.org/10.3389/fmicb.2018.02292
12	2018_1 Details DOI - Open Access	Differential human gut microbiome assemblages during soil-transmitted helminth infections in Indonesia and Liberia	None	None
	Authors Rosa MA, Supali T, Gankpala L, Djuardi Y, Sartono E, Zhou Y, Fischer K, Martin J, Tyagi R, Bolay FK, Fischer PU, Yazdanbakhsh M, Mitreva M Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal Microbiome Project Number PRJNA407815 DOI https://doi.org/10.1186/s40168-018-0416-5
2017
13	2017_2 Details DOI - Open Access	A benign helminth alters the host immune system and the gut microbiota in a rat model system	None	None
	Authors Wegener Parfrey L, Jirků M, Šíma R, Jalovecká M, Sak B, Grigore K, Jirků Pomajbíkova K Host Species None Control Species Rat (Rattus norvegicus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal PLoS One Project Number ERP014631 DOI https://doi.org/10.1371/journal.pone.0182205
14	2017_1 Details DOI - Open Access	Infections by human gastrointestinal helminths are associated with changes in faecal microbiota diversity and composition	None	None
	Authors Jenkins TP, Rathnayaka Y, Perera PK, Peachey LE, Nolan MJ, Krause L, Rajakaruna RS, Cantacessi C Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal PLoS One Project Number PRJEB21999 DOI https://doi.org/10.1371/journal.pone.0184719
2016
15	2016_4 Details DOI - Open Access	Helminth infections and gut microbiota – a feline perspective	None	None
	Authors Duarte AM, Jenkins TP, Latrofa MS, Giannelli A, Papadopoulos E, Madeira de Carvalho L, Nolan MJ, Otranto D, Cantacessi C Host Species None Control Species Cat (Felis catus) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal Parasites & Vectors Project Number PRJNA349988 DOI https://doi.org/10.1186/s13071-016-1908-4
2015
16	2015_8 Details DOI -	(CAT) Differences in the faecal microbiome of non-diarrhoeic clinically healthy dogs and cats associated with Giardia duodenalis infection: impact of hookworms and coccidia	None	None
	Authors Šlapeta J, Dowd SE, Alanazi AD, Westman ME, Brown GK Host Species None Control Species UNKNOWN Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal International Journal for Parasitology Project Number PRJNA276586 DOI https://doi.org/10.1016/j.ijpara.2015.04.001
17	2015_8 Details DOI - Open Access	Differences in the faecal microbiome in Schistosoma haematobium infected children vs. uninfected children	None	None
	Authors Kay GL, Millard A, Sergeant MJ, Midzi N, Gwisai R, Mduluza T, Ivens A, Nausch N, Mutapi F, Pallen M Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal PLoS Neglected Tropical Diseases Project Number Unavailable DOI https://doi.org/10.1371/journal.pntd.0003861
18	2015_7 Details DOI -	(DOG) - Differences in the faecal microbiome of non-diarrhoeic clinically healthy dogs and cats associated with Giardia duodenalis infection: impact of hookworms and coccidia	None	None
	Authors Šlapeta J, Dowd SE, Alanazi AD, Westman ME, Brown GK Host Species None Control Species UNKNOWN Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal International Journal for Parasitology Project Number PRJNA276586 DOI https://doi.org/10.1016/j.ijpara.2015.04.001
19	2015_4 Details DOI - Open Access	Type 2 immunity-dependent reduction of segmented filamentous bacteria in mice infected with the helminthic parasite Nippostrongylus brasiliensis	None	None
	Authors Fricke WF, Song Y, Wang AJ, Smith A, Grinchuk V, Pei C, Ma B, Lu N, Urban JF Jr, Shea-Donohue T, Zhao A Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal Microbiome Project Number PRJNA255974 DOI https://doi.org/10.1186/s40168-015-0103-8
20	2015_3 Details DOI - Open Access	Chronic Trichuris muris infection in C57BL/6 mice causes significant changes in host microbiota and metabolome: effects reversed by pathogen clearance	None	None
	Authors Houlden A, Hayes KS, Bancroft AJ, Worthington JJ, Wang P, Grencis RK, Roberts IS Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness Decrease Richness Decrease Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal PLoS One Project Number ERP008663 DOI https://doi.org/10.1371/journal.pone.0125945
21	2015_2 Details DOI - Open Access	Chronic Trichuris muris infection decreases diversity of the intestinal microbiota and concomitantly increases the abundance of Lactobacilli	None	None
	Authors Holm JB, Sorobetea D, Kiilerich P, Ramayo-Caldas Y, Estellé J, Ma T, Madsen L, Kristiansen K, Svensson-Frej M Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal PLoS One Project Number ERP006108 DOI https://doi.org/10.1371/journal.pone.0125495
22	2015_1 Details DOI - Open Access	Experimental hookworm infection and escalating gluten challenges are associated with increased microbial richness in celiac subjects	None	None
	Authors Giacomin P, Zakrzewski M, Croese J, Su X, Sotillo J, McCann L, Navarro S, Mitreva M, Krause L, Loukas A, Cantacessi C Host Species None Control Species Human (Homo Sapiens) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal Scientific Reports Project Number SRP059769 DOI https://doi.org/10.1038/srep13797
2014
23	2014_3 Details DOI - Open Access	Commensal–pathogen interactions in the intestinal tract: Lactobacilli promote infection with, and are promoted by, helminth parasites	None	None
	Authors Reynolds LA, Smith KA, Filbey KJ, Harcus Y, Hewitson JP, Redpath SA, Valdez Y, Yebra MJ, Finlay BB, Maizels RM Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method Cloning and bacterial 16S rRNA amplicon qPCR Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal Gut Microbes Project Number N/A (clone library) DOI https://doi.org/10.4161/gmic.32155
24	2014_2 Details DOI - Open Access	Impact of experimental hookworm infection on the human gut microbiota	None	None
	Authors Cantacessi C, Giacomin P, Croese J, Zakrzewski M, Sotillo J, McCann L, Nolan MJ, Mitreva M, Krause L, Loukas A Host Species None Control Species Human (Homo Sapiens) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal The Journal of Infectious Diseases Project Number SRP041283 DOI https://doi.org/10.1093/infdis/jiu256
25	2014_1 Details DOI - Open Access	Helminth colonization is associated with increased diversity of the gut microbiota	None	None
	Authors Lee SC, Tang MS, Lim YAL, Choy SH, Kurtz ZD, Cox LM, Gundra UM, Cho I, Bonneau R, Blaser MJ, Chua KH, Loke P Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal PLoS Neglected Tropical Diseases Project Number N/A DOI https://doi.org/10.1371/journal.pntd.0002880

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