Data: SearchNatural

Found Studies

	Mdb ID	Title	Host Species	Parasite Species
2019
1	2019_9 Details DOI - Open Access	Interactions between parasitic infections and the human gut microbiome in Odisha, India	None	None
	Authors Tiffany Huwe, Birendra Kumar Prusty, Aisurya Ray, Shaun Lee, Balachandran Ravindran, Edwin Michael Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository TODO Journal The American Journal of Tropical Medicine and Hygiene Project Number 0 DOI https://doi.org/10.4269/ajtmh.18-0968
2	2019_8 Details DOI -	Removal of adult cyathostomins alters faecal microbiota and promotes an inflammatory phenotype in horses	None	None
	Authors Nicola Walshe, Vivienne Duggan, Raul Cabrera-Rubio, Fiona Crispie, Paul Cotter, Orna Feehan, Grace Mulcahy Host Species None Control Species Horse (Equus ferus caballus) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness Not assessed Sample Site None Sample Type None Sequence Data Repository TODO Journal TODO Project Number New project number DOI https://doi.org/10.1016/j.ijpara.2019.02.003
3	2019_7 Details DOI -	The impact of anthelmintic treatment on human gut microbiota based on cross-sectional and pre- and postdeworming comparisons in Western Kenya	None	None
	Authors Alice V. Easton, Mariam Quiñones, Ivan Vujkovic-Cvijin, Rita G. Oliveira, Stella Kepha, Maurice R. Odiere, Roy M. Anderson, Yasmine Belkaid, Thomas B. Nutman Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository TODO Journal TODO Project Number New project number DOI https://doi.org/10.1128/mBio.00519-19
4	2019_21 Details DOI -	Exploring interactions between Blastocystis sp., Strongyloides spp. and the gut microbiomes of wild chimpanzees in Senegal	None	None
	Authors Justinn Renelies-Hamilton, Marc Noguera-Julian, Mariona Parera, Roger Paredes, Liliana Pacheco, Elena Dacal, José M.Saugar, José M.Rubio, Michael Poulsen, Pamela C.Köster, David Carmena Host Species None Control Species UNKNOWN Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal TODO Project Number PRJNA523828 DOI 10.1016/j.meegid.2019.104010.
5	2019_2 Details DOI - Open Access	Urogenital schistosomiasis is associated with signatures of microbiome dysbiosis in Nigerian adolescents	None	None
	Authors Ajibola O, Rowan AD, Ogedengbe CO, Mshelia MB, Cabral DJ, Eze AA, Obaro S, Belenky P Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository Brown Digital Repository Journal Scientific Reports Project Number https://repository.library.brown.edu/studio/item/bdr:698310/ DOI https://doi.org/10.1038/s41598-018-36709-1
6	2019_19 Details DOI - Open Access	Linking the effects of helminth infection, diet and the gut microbiota with human whole-blood signatures	None	None
	Authors Soo Ching Lee, Mei San Tang, Alice V. Easton, Joseph Cooper Devlin, Ling Ling Chua, Ilseung Cho, Foong Ming Moy, Tsung Fei Khang, Yvonne A. L. Lim , P’ng Loke Host Species None Control Species UNKNOWN Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal PLoS Pathogens Project Number PRJEB34956 and PRJEB34957 DOI 10.1371/journal.ppat.1008066
7	2019_18 Details DOI - Open Access	The Effect of Gut Microbiome Composition on Human Immune Responses: An Exploration of Interference by Helminth Infections	None	None
	Authors Ivonne Martin, Maria M. M. Kaisar, Aprilianto E. Wiria,Firdaus Hamid, Yenny Djuardi, Erliyani Sartono, Bruce A. Rosa, Makedonka Mitreva, Taniawati Supali, Jeanine J. Houwing-Duistermaat, Maria Yazdanbakhsh, and Linda J. Wammes Host Species None Control Species UNKNOWN Infection Type Natural Parasite Species None Profiling Method Cloning and bacterial 16S rRNA amplicon qPCR Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository TODO Journal TODO Project Number SAMN07688522 to SAMN07688545 DOI 10.3389/fgene.2019.01028
8	2019_13 Details DOI -	Dysbiosis associated with acute helminth infections in herbivorous youngstock – observations and implications	None	None
	Authors Laura E. Peachey, Cecilia Castro, Rebecca A. Molena, Timothy P. Jenkins, Julian L. Griffin, Cinzia Cantacessi Host Species None Control Species Horse (Equus ferus caballus) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Mendeley Journal Scientific Reports Project Number DOI: 10.17632/95m8sfd3kt.1 DOI In press
9	2019_1 Details DOI - Open Access	Intestinal parasitic infection alters bacterial gut microbiota in children	None	None
	Authors Toro-Londono MA, Bedoya-Urrego K, Garcia-Montoya GM, Galvan-Diaz AL, Alzate JF Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Decrease Richness Decrease Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal PeerJ — the Journal of Life and Environmental Sciences Project Number PRJNA487588 DOI https://doi.org/10.7717/peerj.6200
2018
10	2018_8 Details DOI - Open Access	Strongyle infection and gut microbiota: profiling of resistant and susceptible horses over a grazing season	None	None
	Authors Clark A, Sallé G, Ballan V, Reigner F, Meynadier A, Cortet J, Koch C, Riou M, Blanchard A, Mach N Host Species None Control Species Horse (Equus ferus caballus) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal Frontiers in Physiology Project Number PRJNA413884 DOI https://doi.org/10.3389/fphys.2018.00272
11	2018_7 Details DOI - Open Access	The relationships between faecal egg counts and gut microbial composition in UK Thoroughbreds infected by cyathostomins	None	None
	Authors Peachey LE, Molena RA, Jenkins TP, Di Cesare A, Traversa D, Hodgkinson JE, Cantacessi C Host Species None Control Species Horse (Equus ferus caballus) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Mendeley Journal International Journal for Parasitology Project Number http://doi.org/10.17632/g7chkjrp8f.1 DOI https://doi.org/10.1016/j.ijpara.2017.11.003
12	2018_6 Details DOI - Open Access	A comprehensive analysis of the faecal microbiome and metabolome of Strongyloides stercoralis infected volunteers from a non-endemic area	None	None
	Authors Jenkins TP, Formenti F, Castro C, Piubelli C, Perandin F, Buonfrate D, Otranto D, Griffin JL, Krause L, Bisoffi Z, Cantacessi C Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Mendeley Journal Scientific Reports Project Number 10.17632/n86dtjvmbv.1) DOI 10.1038/s41598-018-33937-3
13	2018_5 Details DOI - Open Access	Dynamic changes in human-gut microbiome in relation to a placebo-controlled anthelminthic trial in Indonesia	None	None
	Authors Martin I, Djuardi Y, Sartono E, Rosa BA, Supali T, Mitreva M, Houwing-Duistermaat JJ, Yazdanbakhsh M Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Nematode.net Journal PLoS Neglected Tropical Diseases Project Number nematode.net/ Indonesia_Microbiome.htm DOI https://doi.org/10.1371/journal.pntd.0006620
14	2018_3 Details DOI - Open Access	Investigations on the interplays between Schistosoma mansoni, praziquantel and the gut microbiome	None	None
	Authors Schneeberger PHH, Coulibaly JT, Panic G, Daubenberger C, Gueuning M, Frey JE, Keiser J Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal Parasites & Vectors Project Number Unavailable DOI https://doi.org/10.1186/s13071-018-2739-2
15	2018_11 Details DOI - Open Access	Altered gut microbiota composition in subjects infected with Clonorchis sinensis	None	None
	Authors Xu M, Jiang Z, Huang W, Yin J, Ou S, Jiang Y, Meng L, Cao S, Yu A, Cao J, Shen Y Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal Frontiers in Microbiology Project Number SRP158183 DOI https://doi.org/10.3389/fmicb.2018.02292
16	2018_1 Details DOI - Open Access	Differential human gut microbiome assemblages during soil-transmitted helminth infections in Indonesia and Liberia	None	None
	Authors Rosa MA, Supali T, Gankpala L, Djuardi Y, Sartono E, Zhou Y, Fischer K, Martin J, Tyagi R, Bolay FK, Fischer PU, Yazdanbakhsh M, Mitreva M Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal Microbiome Project Number PRJNA407815 DOI https://doi.org/10.1186/s40168-018-0416-5
2017
17	2017_1 Details DOI - Open Access	Infections by human gastrointestinal helminths are associated with changes in faecal microbiota diversity and composition	None	None
	Authors Jenkins TP, Rathnayaka Y, Perera PK, Peachey LE, Nolan MJ, Krause L, Rajakaruna RS, Cantacessi C Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal PLoS One Project Number PRJEB21999 DOI https://doi.org/10.1371/journal.pone.0184719
2016
18	2016_4 Details DOI - Open Access	Helminth infections and gut microbiota – a feline perspective	None	None
	Authors Duarte AM, Jenkins TP, Latrofa MS, Giannelli A, Papadopoulos E, Madeira de Carvalho L, Nolan MJ, Otranto D, Cantacessi C Host Species None Control Species Cat (Felis catus) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal Parasites & Vectors Project Number PRJNA349988 DOI https://doi.org/10.1186/s13071-016-1908-4
2015
19	2015_8 Details DOI -	(CAT) Differences in the faecal microbiome of non-diarrhoeic clinically healthy dogs and cats associated with Giardia duodenalis infection: impact of hookworms and coccidia	None	None
	Authors Šlapeta J, Dowd SE, Alanazi AD, Westman ME, Brown GK Host Species None Control Species UNKNOWN Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal International Journal for Parasitology Project Number PRJNA276586 DOI https://doi.org/10.1016/j.ijpara.2015.04.001
20	2015_8 Details DOI - Open Access	Differences in the faecal microbiome in Schistosoma haematobium infected children vs. uninfected children	None	None
	Authors Kay GL, Millard A, Sergeant MJ, Midzi N, Gwisai R, Mduluza T, Ivens A, Nausch N, Mutapi F, Pallen M Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal PLoS Neglected Tropical Diseases Project Number Unavailable DOI https://doi.org/10.1371/journal.pntd.0003861
21	2015_7 Details DOI -	(DOG) - Differences in the faecal microbiome of non-diarrhoeic clinically healthy dogs and cats associated with Giardia duodenalis infection: impact of hookworms and coccidia	None	None
	Authors Šlapeta J, Dowd SE, Alanazi AD, Westman ME, Brown GK Host Species None Control Species UNKNOWN Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal International Journal for Parasitology Project Number PRJNA276586 DOI https://doi.org/10.1016/j.ijpara.2015.04.001
22	2015_5 Details DOI -	Interactions between multiple helminths and the gut microbiota in wild rodents	None	None
	Authors Kreisinger J, Bastien G, Hauffe HC, Marchesi J, Perkins SE Host Species None Control Species UNKNOWN Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal Philosophical Transactions of the Royal Society London B: Biolological Sciences Project Number ERP009377 DOI https://10.1098/rstb.2014.0295
2014
23	2014_1 Details DOI - Open Access	Helminth colonization is associated with increased diversity of the gut microbiota	None	None
	Authors Lee SC, Tang MS, Lim YAL, Choy SH, Kurtz ZD, Cox LM, Gundra UM, Cho I, Bonneau R, Blaser MJ, Chua KH, Loke P Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal PLoS Neglected Tropical Diseases Project Number N/A DOI https://doi.org/10.1371/journal.pntd.0002880
2013
24	2013_1 Details DOI - Open Access	Patent human infections with the whipworm, Trichuris trichiura, are not associated with alterations in the faecal microbiota	None	None
	Authors Cooper P, Walker AW, Reyes J, Chico M, Salter SJ, Vaca M, Parkhill J Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454) Alpha diversity Evenness Decrease Richness Decrease Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal PLoS One Project Number ERP002465 DOI https://doi.org/10.1371/journal.pone.0076573

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