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Your Query: Natural

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24
Mdb ID Title Host Species Parasite Species

2019

1 2019_9
Details
DOI -
Open Access
Interactions between parasitic infections and the human gut microbiome in Odisha, India None None
Authors
Tiffany Huwe, Birendra Kumar Prusty, Aisurya Ray, Shaun Lee, Balachandran Ravindran, Edwin Michael
Host Species
None
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness Increase
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
The American Journal of Tropical Medicine and Hygiene
Project Number
0
2 2019_8
Details
DOI -
Removal of adult cyathostomins alters faecal microbiota and promotes an inflammatory phenotype in horses None None
Authors
Nicola Walshe, Vivienne Duggan, Raul Cabrera-Rubio, Fiona Crispie, Paul Cotter, Orna Feehan, Grace Mulcahy
Host Species
None
Control Species
Horse (Equus ferus caballus)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness Not assessed
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
TODO
Project Number
New project number
3 2019_7
Details
DOI -
The impact of anthelmintic treatment on human gut microbiota based on cross-sectional and pre- and postdeworming comparisons in Western Kenya None None
Authors
Alice V. Easton, Mariam Quiñones, Ivan Vujkovic-Cvijin, Rita G. Oliveira, Stella Kepha, Maurice R. Odiere, Roy M. Anderson, Yasmine Belkaid, Thomas B. Nutman
Host Species
None
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
TODO
Project Number
New project number
4 2019_21
Details
DOI -
Exploring interactions between Blastocystis sp., Strongyloides spp. and the gut microbiomes of wild chimpanzees in Senegal None None
Authors
Justinn Renelies-Hamilton, Marc Noguera-Julian, Mariona Parera, Roger Paredes, Liliana Pacheco, Elena Dacal, José M.Saugar, José M.Rubio, Michael Poulsen, Pamela C.Köster, David Carmena
Host Species
None
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
TODO
Project Number
PRJNA523828
5 2019_2
Details
DOI -
Open Access
Urogenital schistosomiasis is associated with signatures of microbiome dysbiosis in Nigerian adolescents None None
Authors
Ajibola O, Rowan AD, Ogedengbe CO, Mshelia MB, Cabral DJ, Eze AA, Obaro S, Belenky P
Host Species
None
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness Increase
Sample Site
None
Sample Type
None
Sequence Data Repository
Brown Digital Repository
Journal
Scientific Reports
Project Number
https://repository.library.brown.edu/studio/item/bdr:698310/
6 2019_19
Details
DOI -
Open Access
Linking the effects of helminth infection, diet and the gut microbiota with human whole-blood signatures None None
Authors
Soo Ching Lee, Mei San Tang, Alice V. Easton, Joseph Cooper Devlin, Ling Ling Chua, Ilseung Cho, Foong Ming Moy, Tsung Fei Khang, Yvonne A. L. Lim , P’ng Loke
Host Species
None
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS Pathogens
Project Number
PRJEB34956 and PRJEB34957
7 2019_18
Details
DOI -
Open Access
The Effect of Gut Microbiome Composition on Human Immune Responses: An Exploration of Interference by Helminth Infections None None
Authors
Ivonne Martin, Maria M. M. Kaisar,  Aprilianto E. Wiria,Firdaus Hamid, Yenny Djuardi, Erliyani Sartono, Bruce A. Rosa,  Makedonka Mitreva, Taniawati Supali, Jeanine J. Houwing-Duistermaat,  Maria Yazdanbakhsh, and Linda J. Wammes
Host Species
None
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
None
Profiling Method
Cloning and bacterial 16S rRNA amplicon qPCR
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
TODO
Journal
TODO
Project Number
SAMN07688522 to SAMN07688545
8 2019_13
Details
DOI -
Dysbiosis associated with acute helminth infections in herbivorous youngstock – observations and implications None None
Authors
Laura E. Peachey, Cecilia Castro, Rebecca A. Molena, Timothy P. Jenkins, Julian L. Griffin, Cinzia Cantacessi
Host Species
None
Control Species
Horse (Equus ferus caballus)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
Mendeley
Journal
Scientific Reports
Project Number
DOI: 10.17632/95m8sfd3kt.1
DOI
9 2019_1
Details
DOI -
Open Access
Intestinal parasitic infection alters bacterial gut microbiota in children None None
Authors
Toro-Londono MA, Bedoya-Urrego K, Garcia-Montoya GM, Galvan-Diaz AL, Alzate JF​
Host Species
None
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Decrease
Richness Decrease
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
PeerJ — the Journal of Life and Environmental Sciences
Project Number
PRJNA487588

2018

10 2018_8
Details
DOI -
Open Access
Strongyle infection and gut microbiota: profiling of resistant and susceptible horses over a grazing season None None
Authors
Clark A, Sallé G, Ballan V, Reigner F, Meynadier A, Cortet J, Koch C, Riou M, Blanchard A, Mach N
Host Species
None
Control Species
Horse (Equus ferus caballus)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
Frontiers in Physiology
Project Number
PRJNA413884
11 2018_7
Details
DOI -
Open Access
The relationships between faecal egg counts and gut microbial composition in UK Thoroughbreds infected by cyathostomins None None
Authors
Peachey LE, Molena RA, Jenkins TP, Di Cesare A, Traversa D, Hodgkinson JE, Cantacessi C
Host Species
None
Control Species
Horse (Equus ferus caballus)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
Mendeley
Journal
International Journal for Parasitology
Project Number
http://doi.org/10.17632/g7chkjrp8f.1
12 2018_6
Details
DOI -
Open Access
A comprehensive analysis of the faecal microbiome and metabolome of Strongyloides stercoralis infected volunteers from a non-endemic area None None
Authors
Jenkins TP, Formenti F, Castro C, Piubelli C, Perandin F, Buonfrate D, Otranto D, Griffin JL, Krause L, Bisoffi Z, Cantacessi C
Host Species
None
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
Mendeley
Journal
Scientific Reports
Project Number
10.17632/n86dtjvmbv.1)
13 2018_5
Details
DOI -
Open Access
Dynamic changes in human-gut microbiome in relation to a placebo-controlled anthelminthic trial in Indonesia None None
Authors
Martin I, Djuardi Y, Sartono E, Rosa BA, Supali T, Mitreva M, Houwing-Duistermaat JJ, Yazdanbakhsh M
Host Species
None
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
Nematode.net
Journal
PLoS Neglected Tropical Diseases
Project Number
nematode.net/ Indonesia_Microbiome.htm
14 2018_3
Details
DOI -
Open Access
Investigations on the interplays between Schistosoma mansoni, praziquantel and the gut microbiome None None
Authors
Schneeberger PHH, Coulibaly JT, Panic G, Daubenberger C, Gueuning M, Frey JE, Keiser J
Host Species
None
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
Missing
Journal
Parasites & Vectors
Project Number
Unavailable
15 2018_11
Details
DOI -
Open Access
Altered gut microbiota composition in subjects infected with Clonorchis sinensis None None
Authors
Xu M, Jiang Z, Huang W, Yin J, Ou S, Jiang Y, Meng L, Cao S, Yu A, Cao J, Shen Y
Host Species
None
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Frontiers in Microbiology
Project Number
SRP158183
16 2018_1
Details
DOI -
Open Access
Differential human gut microbiome assemblages during soil-transmitted helminth infections in Indonesia and Liberia None None
Authors
Rosa MA, Supali T, Gankpala L, Djuardi Y, Sartono E, Zhou Y, Fischer K, Martin J, Tyagi R, Bolay FK, Fischer PU, Yazdanbakhsh M, Mitreva M
Host Species
None
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness Increase
Sample Site
None
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Microbiome
Project Number
PRJNA407815

2017

17 2017_1
Details
DOI -
Open Access
Infections by human gastrointestinal helminths are associated with changes in faecal microbiota diversity and composition None None
Authors
Jenkins TP, Rathnayaka Y, Perera PK, Peachey LE, Nolan MJ, Krause L, Rajakaruna RS, Cantacessi C
Host Species
None
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness Increase
Sample Site
None
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
PLoS One
Project Number
PRJEB21999

2016

18 2016_4
Details
DOI -
Open Access
Helminth infections and gut microbiota – a feline perspective None None
Authors
Duarte AM, Jenkins TP, Latrofa MS, Giannelli A, Papadopoulos E, Madeira de Carvalho L, Nolan MJ, Otranto D, Cantacessi C
Host Species
None
Control Species
Cat (Felis catus)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
Parasites & Vectors
Project Number
PRJNA349988

2015

19 2015_8
Details
DOI -
(CAT) Differences in the faecal microbiome of non-diarrhoeic clinically healthy dogs and cats associated with Giardia duodenalis infection: impact of hookworms and coccidia None None
Authors
Šlapeta J, Dowd SE, Alanazi AD, Westman ME, Brown GK
Host Species
None
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
International Journal for Parasitology
Project Number
PRJNA276586
20 2015_8
Details
DOI -
Open Access
Differences in the faecal microbiome in Schistosoma haematobium infected children vs. uninfected children None None
Authors
Kay GL, Millard A, Sergeant MJ, Midzi N, Gwisai R, Mduluza T, Ivens A, Nausch N, Mutapi F, Pallen M
Host Species
None
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
Missing
Journal
PLoS Neglected Tropical Diseases
Project Number
Unavailable
21 2015_7
Details
DOI -
(DOG) - Differences in the faecal microbiome of non-diarrhoeic clinically healthy dogs and cats associated with Giardia duodenalis infection: impact of hookworms and coccidia None None
Authors
Šlapeta J, Dowd SE, Alanazi AD, Westman ME, Brown GK
Host Species
None
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
National Center for Biotechnology Information (NCBI)
Journal
International Journal for Parasitology
Project Number
PRJNA276586
22 2015_5
Details
DOI -
Interactions between multiple helminths and the gut microbiota in wild rodents None None
Authors
Kreisinger J, Bastien G, Hauffe HC, Marchesi J, Perkins SE
Host Species
None
Control Species
UNKNOWN
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness None - no change
Richness None - no change
Beta diversity
Evenness Increase
Sample Site
None
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
Philosophical Transactions of the Royal Society London B: Biolological Sciences
Project Number
ERP009377

2014

23 2014_1
Details
DOI -
Open Access
Helminth colonization is associated with increased diversity of the gut microbiota None None
Authors
Lee SC, Tang MS, Lim YAL, Choy SH, Kurtz ZD, Cox LM, Gundra UM, Cho I, Bonneau R, Blaser MJ, Chua KH, Loke P
Host Species
None
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Illumina)
Alpha diversity
Evenness Increase
Richness Increase
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
Missing
Journal
PLoS Neglected Tropical Diseases
Project Number
N/A

2013

24 2013_1
Details
DOI -
Open Access
Patent human infections with the whipworm, Trichuris trichiura, are not associated with alterations in the faecal microbiota None None
Authors
Cooper P, Walker AW, Reyes J, Chico M, Salter SJ, Vaca M, Parkhill J
Host Species
None
Control Species
Human (Homo Sapiens)
Infection Type
Natural
Parasite Species
None
Profiling Method
High throughput sequencing of bacterial 16S rRNA amplicons (Roche 454)
Alpha diversity
Evenness Decrease
Richness Decrease
Beta diversity
Evenness None - no change
Sample Site
None
Sample Type
None
Sequence Data Repository
European Nucleotide Archive (ENA)
Journal
PLoS One
Project Number
ERP002465