Data: SearchHigh throughput sequencing of bacterial 16S rRNA amplicons (Illumina)

Found Studies

	Mdb ID	Title	Host Species	Parasite Species
2020
1	2020_6 Details DOI - Open Access	Experimental infection with the hookworm, Necator americanus, promotes gut microbial diversity in human volunteers with relapsing multiple sclerosis	None	None
	Authors Timothy Jenkins, David Pritchard, Radu Tanasescu, Gary Telford, Marina Paraiakovou, Cris Constantinescu, Cinzia Cantacessi Host Species None Control Species UNKNOWN Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Mendeley Journal TODO Project Number 10.17632/pkk4vtc57r.1 DOI 10.21203/rs.2.24428/v1
2	2020_5 Details DOI - Open Access	Infection with the sheep gastrointestinal nematode Teladorsagia circumcincta increases luminal pathobionts	None	None
	Authors Alba Cortés, John Wills, Xiaopei Su, Rachel E. Hewitt, Jack Robertson, Riccardo Scotti, Daniel R. G. Price, Yvonne Bartley, Tom N. McNeilly, Lutz Krause, Jonathan J. Powell, Alasdair J. Nisbet, Cinzia Cantacessi Host Species None Control Species UNKNOWN Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal TODO Project Number PRJEB33114 DOI 10.1186/s40168-020-00818-9
3	2020_4 Details DOI -	Worm expulsion is independent of alterations in composition of the colonic bacteria that occur during experimental Hymenolepis diminuta-infection in mice.	None	None
	Authors Adam Shute, Arthur Wang, Timothy S. Jayme, Marc Strous, Kathy D. McCoy, Andre G. Buret, Derek M. McKay Host Species None Control Species UNKNOWN Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository TODO Journal Gut Microbes Project Number missing DOI 10.1080/19490976.2019.1688065
4	2020_3 Details DOI -	The gut microbiota response to helminth infection depends on host sex and genotype.	None	None
	Authors Fei Ling, Natalie Steinel, Jesse Weber, Lei Ma, Chris Smith, Decio Correa, Bin Zhu, Daniel Bolnick & Gaoxue Wang Host Species None Control Species UNKNOWN Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository SRA Journal The ISME Journal Project Number PRJNA398629 and PRJNA398630 DOI 10.1038/s41396-020-0589-3
5	2020_2 Details DOI - Open Access	Infection with a small intestinal helminth, Heligmosomoides polygyrus bakeri, consistently alters microbial communities throughout the murine small and large intestine.	None	None
	Authors Alexis Rapin, Audrey Chuat, Luc Lebon, Mario M. Zaiss, Benjamin J. Marsland, Nicola L. Harris Host Species None Control Species UNKNOWN Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository TODO Journal International Journal for Parasitology Project Number PRJEB32288 DOI 10.1016/j.ijpara.2019.09.005
2019
6	2019_9 Details DOI - Open Access	Interactions between parasitic infections and the human gut microbiome in Odisha, India	None	None
	Authors Tiffany Huwe, Birendra Kumar Prusty, Aisurya Ray, Shaun Lee, Balachandran Ravindran, Edwin Michael Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository TODO Journal The American Journal of Tropical Medicine and Hygiene Project Number 0 DOI https://doi.org/10.4269/ajtmh.18-0968
7	2019_8 Details DOI -	Removal of adult cyathostomins alters faecal microbiota and promotes an inflammatory phenotype in horses	None	None
	Authors Nicola Walshe, Vivienne Duggan, Raul Cabrera-Rubio, Fiona Crispie, Paul Cotter, Orna Feehan, Grace Mulcahy Host Species None Control Species Horse (Equus ferus caballus) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness Not assessed Sample Site None Sample Type None Sequence Data Repository TODO Journal TODO Project Number New project number DOI https://doi.org/10.1016/j.ijpara.2019.02.003
8	2019_7 Details DOI -	The impact of anthelmintic treatment on human gut microbiota based on cross-sectional and pre- and postdeworming comparisons in Western Kenya	None	None
	Authors Alice V. Easton, Mariam Quiñones, Ivan Vujkovic-Cvijin, Rita G. Oliveira, Stella Kepha, Maurice R. Odiere, Roy M. Anderson, Yasmine Belkaid, Thomas B. Nutman Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository TODO Journal TODO Project Number New project number DOI https://doi.org/10.1128/mBio.00519-19
9	2019_5 Details DOI -	Contribution of the gut microbiota in P28GST-mediated anti-inflammatory effects: experimental and clinical insights	None	None
	Authors Benoît Foligné , Coline Plé, Marie Titécat, Arnaud Dendooven, Aurélien Pagny, Catherine Daniel, Elisabeth Singer, Muriel Pottier, Benjamin Bertin, Christel Neut, Dominique Deplanque, Laurent Dubuquoy, Pierre Desreumaux, Monique Capron, Annie Standaert Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Increase Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository TODO Journal TODO Project Number New project number DOI https://doi.org/10.3390/cells8060577
10	2019_4 Details DOI -	Microbiome analysis as a platform R&D tool for parasitic nematode disease management	None	None
	Authors Glenn Hogan, Sidney Walker, Frank Turnbull, Tania Curiao, Alison A. Morrison, Yensi Flores, Leigh Andrews, Marcus J. Claesson, Mark Tangney, Dave J. Bartley Host Species None Control Species Sheep (Ovis aries) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Decrease Richness Decrease Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal TODO Project Number New project number DOI https://doi.org/10.1038/s41396-019-0462-4
11	2019_3 Details DOI -	Chinese liver fluke Clonorchis sinensis infection changes the gut microbiome and increases probiotic Lactobacillus in mice	None	None
	Authors Kim JY, Kim EM, Yi M, Lee J, Lee S, Hwang Y, Yong D, Sohn WM, Yong TS Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal Parasitology Research Project Number Unavailable DOI https://doi.org/10.1007/s00436-018-6179-x
12	2019_21 Details DOI -	Exploring interactions between Blastocystis sp., Strongyloides spp. and the gut microbiomes of wild chimpanzees in Senegal	None	None
	Authors Justinn Renelies-Hamilton, Marc Noguera-Julian, Mariona Parera, Roger Paredes, Liliana Pacheco, Elena Dacal, José M.Saugar, José M.Rubio, Michael Poulsen, Pamela C.Köster, David Carmena Host Species None Control Species UNKNOWN Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal TODO Project Number PRJNA523828 DOI 10.1016/j.meegid.2019.104010.
13	2019_20 Details DOI - Open Access	Trichinella spiralis infection decreases the diversity of the intestinal flora in the infected mouse.	None	None
	Authors Sha Liu, Jin Pan, Xiangli Meng, Junping Zhu, Jie Zhou, Xinping Zhu Host Species None Control Species UNKNOWN Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository TODO Journal TODO Project Number PRJNA479716 and PRJNA553325 DOI 10.1016/j.jmii.2019.09.009
14	2019_2 Details DOI - Open Access	Urogenital schistosomiasis is associated with signatures of microbiome dysbiosis in Nigerian adolescents	None	None
	Authors Ajibola O, Rowan AD, Ogedengbe CO, Mshelia MB, Cabral DJ, Eze AA, Obaro S, Belenky P Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository Brown Digital Repository Journal Scientific Reports Project Number https://repository.library.brown.edu/studio/item/bdr:698310/ DOI https://doi.org/10.1038/s41598-018-36709-1
15	2019_19 Details DOI - Open Access	Linking the effects of helminth infection, diet and the gut microbiota with human whole-blood signatures	None	None
	Authors Soo Ching Lee, Mei San Tang, Alice V. Easton, Joseph Cooper Devlin, Ling Ling Chua, Ilseung Cho, Foong Ming Moy, Tsung Fei Khang, Yvonne A. L. Lim , P’ng Loke Host Species None Control Species UNKNOWN Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal PLoS Pathogens Project Number PRJEB34956 and PRJEB34957 DOI 10.1371/journal.ppat.1008066
16	2019_17 Details DOI -	Ascaris suum infection was associated with a worm-independent reduction in microbial diversity and altered metabolic potential in the porcine gut microbiome.	None	None
	Authors Yueying Wang, Fang Liu, Joseph F. UrbanJr., Oonagh Paerewijck, Peter Geldhof, Robert W.Li Host Species None Control Species UNKNOWN Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository TODO Journal International Journal for Parasitology Project Number SRP127199 DOI 10.1016/j.ijpara.2018.10.007
17	2019_16 Details DOI - Open Access	Cognitive and Microbiome Impacts of Experimental Ancylostoma ceylanicum Hookworm Infections in Hamsters	None	None
	Authors Samuel C. Pan, Doyle V. Ward, Yunqiang Yin, Yan Hu, Mostafa A. Elfawal, Robert E. Clark, and Raffi V. Aroian Host Species None Control Species UNKNOWN Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository TODO Journal Scientific Reports Project Number PRJNA535443 DOI 10.1038/s41598-019-44301-4
18	2019_15 Details DOI - Open Access	Sequential Changes in the Host Gut Microbiota During Infection With the Intestinal Parasitic Nematode Strongyloides venezuelensis	None	None
	Authors Tanzila Afrin, Kazunori Murase, Asuka Kounosu, Vicky L. Hunt, Mark Bligh, Yasunobu Maeda, Akina Hino, Haruhiko Maruyama, Isheng J. Tsai, and Taisei Kikuchi Host Species None Control Species UNKNOWN Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository TODO Journal TODO Project Number SAMD00148911 DOI 10.3389/fcimb.2019.00217
19	2019_14 Details DOI -	Mucosal barrier and Th2 immune responses are enhanced by dietary inulin in pigs infected with Trichuris suis	None	None
	Authors Laura J. Myhill, Sophie Stolzenbach, Tina V. A. Hansen, Kerstin Skovgaard, C. Rune Stensvold, Lee O'Brien Andersen, Peter Nejsum, Helena Mejer, Stig M. Thamsborg, Andrew R. Williams Host Species None Control Species Pig (Sus scrofa domestica) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal Frontiers in Immunology Project Number PRJEB29079 DOI https://doi.org/10.3389/fimmu.2018.02557
20	2019_13 Details DOI -	Dysbiosis associated with acute helminth infections in herbivorous youngstock – observations and implications	None	None
	Authors Laura E. Peachey, Cecilia Castro, Rebecca A. Molena, Timothy P. Jenkins, Julian L. Griffin, Cinzia Cantacessi Host Species None Control Species Horse (Equus ferus caballus) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Mendeley Journal Scientific Reports Project Number DOI: 10.17632/95m8sfd3kt.1 DOI In press
21	2019_12 Details DOI -	Exclusive dependence of IL-10Rα signalling on intestinal microbiota homeostasis and control of whipworm infection	None	None
	Authors María A. Duque-Correa , Natasha A. Karp, Catherine McCarthy, Simon Forman, David Goulding, Geetha Sankaranarayanan, Timothy P. Jenkins, Adam J. Reid, Emma L. Cambridge, Carmen Ballesteros Reviriego, The Sanger Mouse Genetics Project, The 3i consortium , Werner Müller, Cinzia Cantacessi, Gordon Dougan, Richard K. Grencis, Matthew Berriman Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Decrease Richness Decrease Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal PLoS Pathogens Project Number ERP016361 DOI https://doi.org/10.1371/journal.ppat.1007265
22	2019_10 Details DOI - Open Access	Suppression of obesity by an intestinal helminth through interactions with intestinal microbiota	None	None
	Authors Chikako Shimokawa, Seiji Obi, Mioko Shibata, Alex Olia, Takashi Imai, Kazutomo Suzue, Hajime Hisaeda Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Not assessed Richness Not assessed Beta diversity Evenness Not assessed Sample Site None Sample Type None Sequence Data Repository TODO Journal Infection and Immunity (WAS: American Society for Microbiology Journals) Project Number New project number DOI https://doi.org/10.1128/IAI.00042-19
23	2019_1 Details DOI - Open Access	Intestinal parasitic infection alters bacterial gut microbiota in children	None	None
	Authors Toro-Londono MA, Bedoya-Urrego K, Garcia-Montoya GM, Galvan-Diaz AL, Alzate JF Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Decrease Richness Decrease Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal PeerJ — the Journal of Life and Environmental Sciences Project Number PRJNA487588 DOI https://doi.org/10.7717/peerj.6200
2018
24	2018_9 Details DOI -	Intestinal fluke Metagonimus yokogawai infection increases probiotic Lactobacillus in mouse cecum	None	None
	Authors Kim JY, Kim EM, Yi M, Lee J, Lee S, Hwang Y, Yong D, Sohn WM, Yong TS Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal Experimental Parasitology Project Number SRP154312 DOI https://doi.org/10.1016/j.exppara.2018.08.002
25	2018_8 Details DOI - Open Access	Strongyle infection and gut microbiota: profiling of resistant and susceptible horses over a grazing season	None	None
	Authors Clark A, Sallé G, Ballan V, Reigner F, Meynadier A, Cortet J, Koch C, Riou M, Blanchard A, Mach N Host Species None Control Species Horse (Equus ferus caballus) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal Frontiers in Physiology Project Number PRJNA413884 DOI https://doi.org/10.3389/fphys.2018.00272
26	2018_7 Details DOI - Open Access	The relationships between faecal egg counts and gut microbial composition in UK Thoroughbreds infected by cyathostomins	None	None
	Authors Peachey LE, Molena RA, Jenkins TP, Di Cesare A, Traversa D, Hodgkinson JE, Cantacessi C Host Species None Control Species Horse (Equus ferus caballus) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Mendeley Journal International Journal for Parasitology Project Number http://doi.org/10.17632/g7chkjrp8f.1 DOI https://doi.org/10.1016/j.ijpara.2017.11.003
27	2018_6 Details DOI - Open Access	A comprehensive analysis of the faecal microbiome and metabolome of Strongyloides stercoralis infected volunteers from a non-endemic area	None	None
	Authors Jenkins TP, Formenti F, Castro C, Piubelli C, Perandin F, Buonfrate D, Otranto D, Griffin JL, Krause L, Bisoffi Z, Cantacessi C Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Mendeley Journal Scientific Reports Project Number 10.17632/n86dtjvmbv.1) DOI 10.1038/s41598-018-33937-3
28	2018_3 Details DOI - Open Access	Investigations on the interplays between Schistosoma mansoni, praziquantel and the gut microbiome	None	None
	Authors Schneeberger PHH, Coulibaly JT, Panic G, Daubenberger C, Gueuning M, Frey JE, Keiser J Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal Parasites & Vectors Project Number Unavailable DOI https://doi.org/10.1186/s13071-018-2739-2
29	2018_2 Details DOI - Open Access	Schistosoma mansoni infection is associated with quantitative and qualitative modifcations of the mammalian intestinal microbiota	None	None
	Authors Jenkins TP, Peachey LE, Ajami NJ, MacDonald AS, Hsieh MH, Brindley PJ, Cantacessi C, Rinaldi G Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Decrease Richness Decrease Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository Mendeley Journal Scientific Reports Project Number 10.17632/y8c7vpc8zp.1 DOI https://doi.org/10.1038/s41598-018-30412-x
30	2018_12 Details DOI -	The benign helminth Hymenolepis diminuta ameliorates chemically induced colitis in a rat model system	None	None
	Authors Pomajbíková KJ, Jirků M, Levá J, Sobotková K, Morien E, Parfrey LW Host Species None Control Species Rat (Rattus norvegicus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal Parasitology Project Number PRJEB25354 DOI https://doi.org/10.1017/S0031182018000896
31	2018_11 Details DOI - Open Access	Altered gut microbiota composition in subjects infected with Clonorchis sinensis	None	None
	Authors Xu M, Jiang Z, Huang W, Yin J, Ou S, Jiang Y, Meng L, Cao S, Yu A, Cao J, Shen Y Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal Frontiers in Microbiology Project Number SRP158183 DOI https://doi.org/10.3389/fmicb.2018.02292
32	2018_10 Details DOI - Open Access	Mucosal barrier and Th2 immune responses are enhanced by dietary inulin in pigs infected with Trichuris suis	None	None
	Authors Myhill LJ, Stolzenbach S, Hansen TVA, Skovgaard K, Stensvold CR, O'Brien Andersen L, Nejsum P, Mejer H, Thamsborg SM, Williams AR Host Species None Control Species Pig (Sus scrofa domestica) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal Frontiers in Immunology Project Number PRJEB29079 DOI https://doi.org/10.3389/fimmu.2018.02557
33	2018_1 Details DOI - Open Access	Differential human gut microbiome assemblages during soil-transmitted helminth infections in Indonesia and Liberia	None	None
	Authors Rosa MA, Supali T, Gankpala L, Djuardi Y, Sartono E, Zhou Y, Fischer K, Martin J, Tyagi R, Bolay FK, Fischer PU, Yazdanbakhsh M, Mitreva M Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal Microbiome Project Number PRJNA407815 DOI https://doi.org/10.1186/s40168-018-0416-5
2017
34	2017_3 Details DOI -	Microbial community and ovine host response varies with early and late stages of Haemonchus contortus infection	None	None
	Authors El-Ashram S, Al Nasr I, Abouhaje F, El-Kemary M, Huang G, Dinçel G, Mehmood R, Hu M, Suo X Host Species None Control Species Sheep (Ovis aries) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository Missing Journal Veterinary Research Communications Project Number Unavailable DOI https://doi.org/10.1007/s11259-017-9698-5
35	2017_2 Details DOI - Open Access	A benign helminth alters the host immune system and the gut microbiota in a rat model system	None	None
	Authors Wegener Parfrey L, Jirků M, Šíma R, Jalovecká M, Sak B, Grigore K, Jirků Pomajbíkova K Host Species None Control Species Rat (Rattus norvegicus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal PLoS One Project Number ERP014631 DOI https://doi.org/10.1371/journal.pone.0182205
36	2017_1 Details DOI - Open Access	Infections by human gastrointestinal helminths are associated with changes in faecal microbiota diversity and composition	None	None
	Authors Jenkins TP, Rathnayaka Y, Perera PK, Peachey LE, Nolan MJ, Krause L, Rajakaruna RS, Cantacessi C Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal PLoS One Project Number PRJEB21999 DOI https://doi.org/10.1371/journal.pone.0184719
2016
37	2016_5 Details DOI -	Got worms? Perinatal exposure to helminths prevents persistent immune sensitization and cognitive dysfunction induced by early-life infection	None	None
	Authors Williamson LL, McKenney EA, Holzknecht ZE, Belliveau C, Rawls JF, Poulton S, Parker W, Bilbo SD Host Species None Control Species Rat (Rattus norvegicus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Not assessed Richness Not assessed Beta diversity Evenness Not assessed Sample Site None Sample Type None Sequence Data Repository Missing Journal Brain, Behavior, and Immunity Project Number Unavailable DOI https://doi.org/10.1016/j.bbi.2015.07.006
38	2016_4 Details DOI - Open Access	Helminth infections and gut microbiota – a feline perspective	None	None
	Authors Duarte AM, Jenkins TP, Latrofa MS, Giannelli A, Papadopoulos E, Madeira de Carvalho L, Nolan MJ, Otranto D, Cantacessi C Host Species None Control Species Cat (Felis catus) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal Parasites & Vectors Project Number PRJNA349988 DOI https://doi.org/10.1186/s13071-016-1908-4
39	2016_3 Details DOI - Open Access	The effect of helminth infection on the microbial composition and structure of the caprine abomasal microbiome	None	None
	Authors Li RW, Li W, Sun J, Yu P, Baldwin RL, Urban JF Jr Host Species None Control Species Alpine Goat (Capra aegagrus hircus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository MG-RAST Journal Scientific Reports Project Number mgp13390; mgm4629311.3 to mgm4629350.3 DOI https://doi.org/10.1038/srep20606
40	2016_1 Details DOI - Open Access	Changes in duodenal tissue-associated microbiota following hookworm infection and consecutive gluten challenges in humans with coeliac disease	None	None
	Authors Giacomin P, Zakrzewski M, Jenkins TP, Su X, Al-Hallaf R, Croese J, de Vries S, Grant A, Mitreva M, Loukas A, Krause L, Cantacessi C Host Species None Control Species Human (Homo Sapiens) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal Scientific Reports Project Number SRP078558 DOI https://doi.org/10.1038/srep36797
2015
41	2015_8 Details DOI - Open Access	Differences in the faecal microbiome in Schistosoma haematobium infected children vs. uninfected children	None	None
	Authors Kay GL, Millard A, Sergeant MJ, Midzi N, Gwisai R, Mduluza T, Ivens A, Nausch N, Mutapi F, Pallen M Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal PLoS Neglected Tropical Diseases Project Number Unavailable DOI https://doi.org/10.1371/journal.pntd.0003861
42	2015_6 Details DOI - Open Access	Alteration of the rat cecal microbiome during colonization with the helminth Hymenolepis diminuta	None	None
	Authors McKenney EA, Williamson L, Yoder AD, Rawls JF, Bilbo SD, Parker W Host Species None Control Species Rat (Rattus norvegicus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal Gut Microbes Project Number PRJNA270622 DOI https://doi.org/10.1080/19490976.2015.1047128
43	2015_4 Details DOI - Open Access	Type 2 immunity-dependent reduction of segmented filamentous bacteria in mice infected with the helminthic parasite Nippostrongylus brasiliensis	None	None
	Authors Fricke WF, Song Y, Wang AJ, Smith A, Grinchuk V, Pei C, Ma B, Lu N, Urban JF Jr, Shea-Donohue T, Zhao A Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness None - no change Richness None - no change Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository National Center for Biotechnology Information (NCBI) Journal Microbiome Project Number PRJNA255974 DOI https://doi.org/10.1186/s40168-015-0103-8
44	2015_2 Details DOI - Open Access	Chronic Trichuris muris infection decreases diversity of the intestinal microbiota and concomitantly increases the abundance of Lactobacilli	None	None
	Authors Holm JB, Sorobetea D, Kiilerich P, Ramayo-Caldas Y, Estellé J, Ma T, Madsen L, Kristiansen K, Svensson-Frej M Host Species None Control Species Mouse (Mus musculus) Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness Increase Sample Site None Sample Type None Sequence Data Repository European Nucleotide Archive (ENA) Journal PLoS One Project Number ERP006108 DOI https://doi.org/10.1371/journal.pone.0125495
2014
45	2014_1 Details DOI - Open Access	Helminth colonization is associated with increased diversity of the gut microbiota	None	None
	Authors Lee SC, Tang MS, Lim YAL, Choy SH, Kurtz ZD, Cox LM, Gundra UM, Cho I, Bonneau R, Blaser MJ, Chua KH, Loke P Host Species None Control Species Human (Homo Sapiens) Infection Type Natural Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal PLoS Neglected Tropical Diseases Project Number N/A DOI https://doi.org/10.1371/journal.pntd.0002880
2012
46	2012_1 Details DOI - Open Access	Therapeutic helminth infection of macaques with idiopathic chronic diarrhea alters the inflammatory signature and mucosal microbiota of the colon	None	None
	Authors Broadhurst MJ, Ardeshir A, Kanwar B, Mirpuri J, Gundra UM, Leung JM, Wiens KE, Vujkovic-Cvijin I, Kim CC, Yarovinsky F, Lerche NW, McCune JM, Loke P Host Species None Control Species Macaca mulatta - captive Infection Type Experimental Parasite Species None Profiling Method High throughput sequencing of bacterial 16S rRNA amplicons (Illumina) Alpha diversity Evenness Increase Richness Increase Beta diversity Evenness None - no change Sample Site None Sample Type None Sequence Data Repository Missing Journal PLoS Pathogens Project Number N/A DOI https://doi.org/10.1371/journal.ppat.1003000

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